miRNA display CGI


Results 1 - 20 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 5' -63.1 NC_004812.1 + 156471 0.68 0.464376
Target:  5'- cGCGUuuGGGCGggCUCCCGg-GCGGGCu -3'
miRNA:   3'- uCGUAu-CCCGUa-GGGGGCggCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 156193 0.76 0.162681
Target:  5'- cGGCcccGGGCGUCCCCUcccccgcgccgcgaGCaCGCGGGCu -3'
miRNA:   3'- -UCGuauCCCGUAGGGGG--------------CG-GCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 156077 0.7 0.345246
Target:  5'- cGGCAgcccGGGCgccGgccccgccccuccccUCCCCCGCCGCGcGCg -3'
miRNA:   3'- -UCGUau--CCCG---U---------------AGGGGGCGGCGCcCG- -5'
21373 5' -63.1 NC_004812.1 + 156026 0.66 0.586069
Target:  5'- cGCccGGGGCcgggggCCgCGCCGCGGGa -3'
miRNA:   3'- uCGuaUCCCGuag---GGgGCGGCGCCCg -5'
21373 5' -63.1 NC_004812.1 + 155818 0.67 0.54755
Target:  5'- cGGCGgcgGGGGCGgcggCCCaucucCCGCGGGg -3'
miRNA:   3'- -UCGUa--UCCCGUa---GGGggc--GGCGCCCg -5'
21373 5' -63.1 NC_004812.1 + 155781 0.66 0.576379
Target:  5'- gGGCccuccGGGCGucggacaccgcuUCCCggCCgGCCGUGGGCg -3'
miRNA:   3'- -UCGuau--CCCGU------------AGGG--GG-CGGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 155742 0.66 0.59579
Target:  5'- cGCGcgcGGGCGgggCUCgCgGCCGCGGGg -3'
miRNA:   3'- uCGUau-CCCGUa--GGG-GgCGGCGCCCg -5'
21373 5' -63.1 NC_004812.1 + 155739 0.66 0.59579
Target:  5'- gGGCGcgcgcGGGCGgggCUCgCgGCCGCGGGg -3'
miRNA:   3'- -UCGUau---CCCGUa--GGG-GgCGGCGCCCg -5'
21373 5' -63.1 NC_004812.1 + 155601 0.66 0.576379
Target:  5'- cGCG-GGGGCGcggCCCCgGCCGgGcaGGCc -3'
miRNA:   3'- uCGUaUCCCGUa--GGGGgCGGCgC--CCG- -5'
21373 5' -63.1 NC_004812.1 + 155455 0.67 0.509865
Target:  5'- gAGCGgGGGGCcgggCUCgCGCCGcCGGGg -3'
miRNA:   3'- -UCGUaUCCCGua--GGGgGCGGC-GCCCg -5'
21373 5' -63.1 NC_004812.1 + 155086 0.7 0.348946
Target:  5'- gGGCGgcGGcGGCAUgCCCUCGCgcggcggCGCGGGCc -3'
miRNA:   3'- -UCGUa-UC-CCGUA-GGGGGCG-------GCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 154479 0.68 0.482328
Target:  5'- cGCGgccGGGCucgaGUCgUCCGUCGuCGGGCg -3'
miRNA:   3'- uCGUau-CCCG----UAGgGGGCGGC-GCCCG- -5'
21373 5' -63.1 NC_004812.1 + 154441 0.72 0.287334
Target:  5'- gGGCGgcAGGGCGUCgggCCCgGCgCGCGcGGCg -3'
miRNA:   3'- -UCGUa-UCCCGUAG---GGGgCG-GCGC-CCG- -5'
21373 5' -63.1 NC_004812.1 + 154155 0.66 0.59579
Target:  5'- ----gAGGGCGUCCUCgGCCGgcgccuauCGGGg -3'
miRNA:   3'- ucguaUCCCGUAGGGGgCGGC--------GCCCg -5'
21373 5' -63.1 NC_004812.1 + 153652 0.67 0.509865
Target:  5'- gGGCGgggagAGGGCGcgcacggugCgCCCGCCGaGGGUg -3'
miRNA:   3'- -UCGUa----UCCCGUa--------GgGGGCGGCgCCCG- -5'
21373 5' -63.1 NC_004812.1 + 153578 0.68 0.49143
Target:  5'- cGCGcuGGGCAaCCgCCuCUGCGGGCc -3'
miRNA:   3'- uCGUauCCCGUaGGgGGcGGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 153356 0.69 0.396323
Target:  5'- gGGCGgcgGGGGCGcgggcgCCCCUG--GCGGGCg -3'
miRNA:   3'- -UCGUa--UCCCGUa-----GGGGGCggCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 153161 0.66 0.615297
Target:  5'- cGCc--GGGCccgaCCCCCGCgGCGGcugGCg -3'
miRNA:   3'- uCGuauCCCGua--GGGGGCGgCGCC---CG- -5'
21373 5' -63.1 NC_004812.1 + 153105 0.67 0.557114
Target:  5'- gGGCugucUGGGcGCcgCCCCgGggGCGGGCg -3'
miRNA:   3'- -UCGu---AUCC-CGuaGGGGgCggCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 152855 0.69 0.429557
Target:  5'- gGGCGgcGGGCugggCCUgaGCgGCGGGCc -3'
miRNA:   3'- -UCGUauCCCGua--GGGggCGgCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.