miRNA display CGI


Results 1 - 20 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 5' -63.1 NC_004812.1 + 124017 1.11 0.000489
Target:  5'- cAGCAUAGGGCAUCCCCCGCCGCGGGCg -3'
miRNA:   3'- -UCGUAUCCCGUAGGGGGCGGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 1872 1.11 0.000489
Target:  5'- cAGCAUAGGGCAUCCCCCGCCGCGGGCg -3'
miRNA:   3'- -UCGUAUCCCGUAGGGGGCGGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 133862 0.84 0.039583
Target:  5'- gAGCGUGGGGUcgcggugaGUCCCUCGCCGCucgGGGCg -3'
miRNA:   3'- -UCGUAUCCCG--------UAGGGGGCGGCG---CCCG- -5'
21373 5' -63.1 NC_004812.1 + 10431 0.8 0.079455
Target:  5'- uGGUGUugAGGaGCAgcaCCCCGCCGCGGGCc -3'
miRNA:   3'- -UCGUA--UCC-CGUag-GGGGCGGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 106427 0.79 0.09254
Target:  5'- cGCgGUAGGGCG-CCCCCgacGCCGgGGGCg -3'
miRNA:   3'- uCG-UAUCCCGUaGGGGG---CGGCgCCCG- -5'
21373 5' -63.1 NC_004812.1 + 18566 0.79 0.09254
Target:  5'- cGGCucgAGGGguUUCCCCuCCGCGGGCc -3'
miRNA:   3'- -UCGua-UCCCguAGGGGGcGGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 147910 0.79 0.097339
Target:  5'- gGGCGcggAGGGCGUCCCgCCGUCGCaGGaGCg -3'
miRNA:   3'- -UCGUa--UCCCGUAGGG-GGCGGCG-CC-CG- -5'
21373 5' -63.1 NC_004812.1 + 148436 0.78 0.104981
Target:  5'- gAGCGUGGGGUcgcggugaGUCCCUCGcCCGCucgGGGCg -3'
miRNA:   3'- -UCGUAUCCCG--------UAGGGGGC-GGCG---CCCG- -5'
21373 5' -63.1 NC_004812.1 + 77175 0.77 0.125055
Target:  5'- cGCGgcGGcGCcgUCCCCGCCGCcGGGCu -3'
miRNA:   3'- uCGUauCC-CGuaGGGGGCGGCG-CCCG- -5'
21373 5' -63.1 NC_004812.1 + 52697 0.77 0.128198
Target:  5'- gGGCAUcguggGGGGCGUCguCUCCGCCGUcucGGGCg -3'
miRNA:   3'- -UCGUA-----UCCCGUAG--GGGGCGGCG---CCCG- -5'
21373 5' -63.1 NC_004812.1 + 84005 0.77 0.128198
Target:  5'- cGGCc--GGGCG-CCCUCGCCGuCGGGCa -3'
miRNA:   3'- -UCGuauCCCGUaGGGGGCGGC-GCCCG- -5'
21373 5' -63.1 NC_004812.1 + 68617 0.77 0.134705
Target:  5'- gAGCGaccccGGGGCGUCCCUCcucucgGCCGCGGGg -3'
miRNA:   3'- -UCGUa----UCCCGUAGGGGG------CGGCGCCCg -5'
21373 5' -63.1 NC_004812.1 + 109737 0.77 0.136042
Target:  5'- uGCGUGcGGGCGUCCUgcgucagcgccgcgaUCGCCGgGGGCg -3'
miRNA:   3'- uCGUAU-CCCGUAGGG---------------GGCGGCgCCCG- -5'
21373 5' -63.1 NC_004812.1 + 54746 0.77 0.138071
Target:  5'- cGGCGcGGGGCcgcAUCCCCgCgGCgCGCGGGCg -3'
miRNA:   3'- -UCGUaUCCCG---UAGGGG-G-CG-GCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 106968 0.77 0.138071
Target:  5'- cGCGUaccccaGGGGCGccUCCCCCucccgccCCGCGGGCg -3'
miRNA:   3'- uCGUA------UCCCGU--AGGGGGc------GGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 27951 0.77 0.141167
Target:  5'- cGGCGggcuGGGCcgCCCgCCccugcggGCCGCGGGCg -3'
miRNA:   3'- -UCGUau--CCCGuaGGG-GG-------CGGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 50020 0.77 0.141514
Target:  5'- uGGCGgcGGcGC-UCCCCC-CCGCGGGCc -3'
miRNA:   3'- -UCGUauCC-CGuAGGGGGcGGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 4194 0.76 0.148638
Target:  5'- cGCcgAGGGCG-CCCCCGCgGCGcccGGCc -3'
miRNA:   3'- uCGuaUCCCGUaGGGGGCGgCGC---CCG- -5'
21373 5' -63.1 NC_004812.1 + 121695 0.76 0.148638
Target:  5'- cGCcgAGGGCG-CCCCCGCgGCGcccGGCc -3'
miRNA:   3'- uCGuaUCCCGUaGGGGGCGgCGC---CCG- -5'
21373 5' -63.1 NC_004812.1 + 126105 0.76 0.162681
Target:  5'- cGGCcccGGGCGUCCCCUcccccgcgccgcgaGCaCGCGGGCu -3'
miRNA:   3'- -UCGuauCCCGUAGGGGG--------------CG-GCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.