miRNA display CGI


Results 1 - 20 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21375 3' -57 NC_004812.1 + 156429 0.7 0.664387
Target:  5'- gGGCGCGcgcguuuucGGGGGGcGGGGGuucguucggGGggGCGCGu -3'
miRNA:   3'- -UCGCGC---------UCCCCU-CCUCC---------UCuuUGUGU- -5'
21375 3' -57 NC_004812.1 + 156360 0.78 0.250963
Target:  5'- gGGgGgGGGGGGGGGGGGAGGAGaGCGg -3'
miRNA:   3'- -UCgCgCUCCCCUCCUCCUCUUUgUGU- -5'
21375 3' -57 NC_004812.1 + 156335 0.77 0.302764
Target:  5'- gGGC-CGAGGGGGGGGGGGGggGgGg- -3'
miRNA:   3'- -UCGcGCUCCCCUCCUCCUCuuUgUgu -5'
21375 3' -57 NC_004812.1 + 156249 0.74 0.438677
Target:  5'- gGGCGgGAGGGGgacGGGAGG-GGGACGgGa -3'
miRNA:   3'- -UCGCgCUCCCC---UCCUCCuCUUUGUgU- -5'
21375 3' -57 NC_004812.1 + 156218 0.68 0.762165
Target:  5'- cGCGCGuGGGGGGcGGGGcgccgcgGGAuGCGCc -3'
miRNA:   3'- uCGCGCuCCCCUC-CUCC-------UCUuUGUGu -5'
21375 3' -57 NC_004812.1 + 156216 0.67 0.808724
Target:  5'- nGgGaGAGGGacGGGGGGGAGAGACGgAg -3'
miRNA:   3'- uCgCgCUCCC--CUCCUCCUCUUUGUgU- -5'
21375 3' -57 NC_004812.1 + 156182 0.79 0.239209
Target:  5'- cGCGCGAggaaGGGGAGGGGGGGAGggggccGCugGg -3'
miRNA:   3'- uCGCGCU----CCCCUCCUCCUCUU------UGugU- -5'
21375 3' -57 NC_004812.1 + 156062 0.69 0.73429
Target:  5'- cGCGCGccggGGcGGGAGGcGGGAGGgcccgGGCGCGc -3'
miRNA:   3'- uCGCGC----UC-CCCUCC-UCCUCU-----UUGUGU- -5'
21375 3' -57 NC_004812.1 + 156009 0.71 0.620624
Target:  5'- cGGCGCG-GGGGAGGggacgcccggggccGGGGGccGCGCc -3'
miRNA:   3'- -UCGCGCuCCCCUCC--------------UCCUCuuUGUGu -5'
21375 3' -57 NC_004812.1 + 155874 0.8 0.206691
Target:  5'- cGCGCGcGGcGGGGGAGGGGAGGgGCGg -3'
miRNA:   3'- uCGCGCuCC-CCUCCUCCUCUUUgUGU- -5'
21375 3' -57 NC_004812.1 + 155710 0.78 0.250963
Target:  5'- gGGCGUG-GGGGAGGGGGguggggggugGGggGCGCGc -3'
miRNA:   3'- -UCGCGCuCCCCUCCUCC----------UCuuUGUGU- -5'
21375 3' -57 NC_004812.1 + 155549 0.84 0.103557
Target:  5'- gGGCGgGAGGGGcgggggaGGGGGGAGggGCGCGc -3'
miRNA:   3'- -UCGCgCUCCCC-------UCCUCCUCuuUGUGU- -5'
21375 3' -57 NC_004812.1 + 155243 0.82 0.13814
Target:  5'- uGCGCGAGGGcGGGccGAGGGGggGCGCGg -3'
miRNA:   3'- uCGCGCUCCC-CUC--CUCCUCuuUGUGU- -5'
21375 3' -57 NC_004812.1 + 155062 0.77 0.309789
Target:  5'- cGCGCGuAGGGGggaaGGGGGGGGggGCGg- -3'
miRNA:   3'- uCGCGC-UCCCC----UCCUCCUCuuUGUgu -5'
21375 3' -57 NC_004812.1 + 155009 0.67 0.841608
Target:  5'- cGCGCGGGGcgcccGGAGGcggggagccgugcGGGGGGGACcCGg -3'
miRNA:   3'- uCGCGCUCC-----CCUCC-------------UCCUCUUUGuGU- -5'
21375 3' -57 NC_004812.1 + 154946 0.82 0.137079
Target:  5'- cGGaCGCGGGGGGGGGGGGAGGGgggacgggcgggccGCGCGg -3'
miRNA:   3'- -UC-GCGCUCCCCUCCUCCUCUU--------------UGUGU- -5'
21375 3' -57 NC_004812.1 + 154856 0.68 0.76311
Target:  5'- cGGCuGCGAGGGGGcgcGGGcucgggccgcGGAGgcGCGCGg -3'
miRNA:   3'- -UCG-CGCUCCCCU---CCU----------CCUCuuUGUGU- -5'
21375 3' -57 NC_004812.1 + 154772 0.8 0.190486
Target:  5'- uGCGCggggaGAGGGGAGGAGGGGGGaggagaggcgaggcGCGCAg -3'
miRNA:   3'- uCGCG-----CUCCCCUCCUCCUCUU--------------UGUGU- -5'
21375 3' -57 NC_004812.1 + 154735 0.66 0.865725
Target:  5'- gGGgGCGGGcGGGGGucgcGGAGGAGCGg- -3'
miRNA:   3'- -UCgCGCUCcCCUCCu---CCUCUUUGUgu -5'
21375 3' -57 NC_004812.1 + 153456 0.87 0.071692
Target:  5'- gGGCGCGGGGGGGGGcGGAGGggAGCGCGg -3'
miRNA:   3'- -UCGCGCUCCCCUCCuCCUCU--UUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.