miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21375 5' -68.3 NC_004812.1 + 60290 0.66 0.376002
Target:  5'- gCCCCgCCgucgcgCCCCCCCUugggggCCUUGCCCu--- -3'
miRNA:   3'- -GGGG-GG------GGGGGGGG------GGAACGGGugac -5'
21375 5' -68.3 NC_004812.1 + 146139 0.66 0.375251
Target:  5'- uCCCCCCCgcggUCCCCacccggcauggaaCCCCUgcgGCUCGCc- -3'
miRNA:   3'- -GGGGGGG----GGGGG-------------GGGGAa--CGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 146208 0.66 0.376002
Target:  5'- aCCUCCgugauCCCCCUCaCCCCgccgGCCCAg-- -3'
miRNA:   3'- -GGGGG-----GGGGGGG-GGGGaa--CGGGUgac -5'
21375 5' -68.3 NC_004812.1 + 65490 0.66 0.38357
Target:  5'- gCCCCgCCCCCaagcgaCCCCacgGCCgGCa- -3'
miRNA:   3'- gGGGGgGGGGGg-----GGGGaa-CGGgUGac -5'
21375 5' -68.3 NC_004812.1 + 3830 0.66 0.38357
Target:  5'- gCCCCgCCCCaggCCCCgCCCCUcUGCgCCG-UGg -3'
miRNA:   3'- -GGGG-GGGG---GGGG-GGGGA-ACG-GGUgAC- -5'
21375 5' -68.3 NC_004812.1 + 66856 0.66 0.368536
Target:  5'- aCCCgCCCCCCaaCUCgUUGCCgCACg- -3'
miRNA:   3'- -GGGgGGGGGGggGGGgAACGG-GUGac -5'
21375 5' -68.3 NC_004812.1 + 123885 0.66 0.391238
Target:  5'- gUCCCCUCCCCCgacggggcggCCCCgacGUCCGCc- -3'
miRNA:   3'- gGGGGGGGGGGG----------GGGGaa-CGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 126840 0.66 0.399005
Target:  5'- gCgCCCCgCCCCUCCCCgguuuggcGUCCGCc- -3'
miRNA:   3'- -GgGGGGgGGGGGGGGGaa------CGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 125903 0.66 0.40687
Target:  5'- uCUCUCCCCCCCgUCCCUcucCCCAg-- -3'
miRNA:   3'- -GGGGGGGGGGGgGGGGAac-GGGUgac -5'
21375 5' -68.3 NC_004812.1 + 140690 0.66 0.368536
Target:  5'- aCCCCgCgaCCCCaCCCCC--GCCCGCc- -3'
miRNA:   3'- -GGGGgGg-GGGG-GGGGGaaCGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 42127 0.66 0.376002
Target:  5'- gCCCgCCgCCCUUCCCCCggcgGCCaCGCc- -3'
miRNA:   3'- -GGGgGG-GGGGGGGGGGaa--CGG-GUGac -5'
21375 5' -68.3 NC_004812.1 + 116406 0.66 0.399005
Target:  5'- aCCCCCgCgCagagCCCCCgcgGCCCGCg- -3'
miRNA:   3'- gGGGGGgGgGg---GGGGGaa-CGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 120645 0.66 0.375251
Target:  5'- gCCCCCCgagUCUCCCgCCCggGCCCccgugaccgcggcGCUGc -3'
miRNA:   3'- -GGGGGG---GGGGGGgGGGaaCGGG-------------UGAC- -5'
21375 5' -68.3 NC_004812.1 + 10850 0.66 0.379017
Target:  5'- aCCCCCCCgCgcgacgaccgacgagCCCCCCga-CCCGCg- -3'
miRNA:   3'- gGGGGGGGgG---------------GGGGGGaacGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 9650 0.66 0.391238
Target:  5'- gCCCaCUCCCaCCCCgCCCggacgGaCCCACg- -3'
miRNA:   3'- -GGG-GGGGG-GGGGgGGGaa---C-GGGUGac -5'
21375 5' -68.3 NC_004812.1 + 84756 0.66 0.414832
Target:  5'- gCCgaCCCCCaUCCCCCggGCCCGgaGa -3'
miRNA:   3'- gGGggGGGGG-GGGGGGaaCGGGUgaC- -5'
21375 5' -68.3 NC_004812.1 + 146458 0.66 0.38357
Target:  5'- gCCCCCCCCCCgUCgCCgucugucGCUCcCUGc -3'
miRNA:   3'- -GGGGGGGGGGgGGgGGaa-----CGGGuGAC- -5'
21375 5' -68.3 NC_004812.1 + 127094 0.66 0.399005
Target:  5'- uCCCCCCCgcacggcuCCCCgCCUCCgggcGcCCCGCg- -3'
miRNA:   3'- -GGGGGGG--------GGGG-GGGGGaa--C-GGGUGac -5'
21375 5' -68.3 NC_004812.1 + 21937 0.66 0.391238
Target:  5'- gCUCCgCCCCCCUCCUCgcgagcGCCUcCUGc -3'
miRNA:   3'- -GGGGgGGGGGGGGGGGaa----CGGGuGAC- -5'
21375 5' -68.3 NC_004812.1 + 3949 0.66 0.38357
Target:  5'- gCCCCCgCCUCCCggaggcccggcgCCCCCccGCCgCGCg- -3'
miRNA:   3'- -GGGGG-GGGGGG------------GGGGGaaCGG-GUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.