miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21375 5' -68.3 NC_004812.1 + 165 0.67 0.325232
Target:  5'- cCCCCCgaacgaaCCCCCgCCCCCCgaaaacGCgCGCg- -3'
miRNA:   3'- -GGGGG-------GGGGG-GGGGGGaa----CGgGUGac -5'
21375 5' -68.3 NC_004812.1 + 256 0.77 0.068754
Target:  5'- uCCCCCCCCCCCCCCCC---CCCn--- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaacGGGugac -5'
21375 5' -68.3 NC_004812.1 + 276 0.91 0.006115
Target:  5'- cCCCCCCCCCCCCCCCCUcgGCCCcCUc -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAa-CGGGuGAc -5'
21375 5' -68.3 NC_004812.1 + 339 0.68 0.29327
Target:  5'- uCCCCCUCCCgUCCCCCU--CCCg--- -3'
miRNA:   3'- -GGGGGGGGGgGGGGGGAacGGGugac -5'
21375 5' -68.3 NC_004812.1 + 361 0.74 0.114672
Target:  5'- uCCCCCUCCCgUCCCCCUcccGCcCCGCUc -3'
miRNA:   3'- -GGGGGGGGGgGGGGGGAa--CG-GGUGAc -5'
21375 5' -68.3 NC_004812.1 + 395 0.66 0.40687
Target:  5'- uCUCUCCCCCCCgUCCCUcucCCCAg-- -3'
miRNA:   3'- -GGGGGGGGGGGgGGGGAac-GGGUgac -5'
21375 5' -68.3 NC_004812.1 + 425 0.8 0.040804
Target:  5'- cCCCUCCCCCCCUCCCCUUcCUCGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 498 0.71 0.179534
Target:  5'- aCCCCUUCUCCCggCCCCCggucCCCGCUGu -3'
miRNA:   3'- -GGGGGGGGGGG--GGGGGaac-GGGUGAC- -5'
21375 5' -68.3 NC_004812.1 + 545 0.67 0.346755
Target:  5'- gCCCUCCCgCCUCCCgCCCcgGCgCGCg- -3'
miRNA:   3'- -GGGGGGG-GGGGGG-GGGaaCGgGUGac -5'
21375 5' -68.3 NC_004812.1 + 592 0.67 0.361173
Target:  5'- gCCCCCggccccgggcgUCCCCUCCCCC--GCgCCGCg- -3'
miRNA:   3'- -GGGGG-----------GGGGGGGGGGGaaCG-GGUGac -5'
21375 5' -68.3 NC_004812.1 + 735 0.75 0.104136
Target:  5'- gCCCCUCCCCUCCCCCgccGCgCGCg- -3'
miRNA:   3'- gGGGGGGGGGGGGGGGaa-CGgGUGac -5'
21375 5' -68.3 NC_004812.1 + 894 0.8 0.045093
Target:  5'- cCCCCaCCCCCCaCCCCCCUccCCCACg- -3'
miRNA:   3'- -GGGG-GGGGGG-GGGGGGAacGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 1060 0.82 0.031754
Target:  5'- uCCCCCCUCCCCCgCCCCUcccGCCCucCUGg -3'
miRNA:   3'- -GGGGGGGGGGGG-GGGGAa--CGGGu-GAC- -5'
21375 5' -68.3 NC_004812.1 + 1332 0.66 0.399005
Target:  5'- gCgCCCCgCCCCUCCCCgguuuggcGUCCGCc- -3'
miRNA:   3'- -GgGGGGgGGGGGGGGGaa------CGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 1366 0.71 0.192364
Target:  5'- gCCCCCCCUcggCCCgCCCUCgcgcaccaagGCCCGCUc -3'
miRNA:   3'- -GGGGGGGG---GGG-GGGGGaa--------CGGGUGAc -5'
21375 5' -68.3 NC_004812.1 + 1548 0.78 0.056413
Target:  5'- cCCCCCCCCUUCCCCCCUacGCgCGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAa-CGgGUGac -5'
21375 5' -68.3 NC_004812.1 + 1586 0.66 0.399005
Target:  5'- uCCCCCCCgcacggcuCCCCgCCUCCgggcGcCCCGCg- -3'
miRNA:   3'- -GGGGGGG--------GGGG-GGGGGaa--C-GGGUGac -5'
21375 5' -68.3 NC_004812.1 + 1665 0.85 0.018228
Target:  5'- cCCCUCCCCCCCCCCCCgcGUCCGCc- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 1836 0.78 0.060918
Target:  5'- uCCCCCCUCCUCCCCUCUccccgcgcagccccgGCCCGCUc -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAa--------------CGGGUGAc -5'
21375 5' -68.3 NC_004812.1 + 1884 0.7 0.213593
Target:  5'- aCCCCCgCCCgCCCCCCaauaaaccacacgUGCaCCGCa- -3'
miRNA:   3'- -GGGGGgGGGgGGGGGGa------------ACG-GGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.