miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21375 5' -68.3 NC_004812.1 + 149644 1.08 0.000333
Target:  5'- cCCCCCCCCCCCCCCCCUUGCCCACUGu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAACGGGUGAC- -5'
21375 5' -68.3 NC_004812.1 + 118743 0.97 0.002043
Target:  5'- cCCCCCCCCCCCCCCCCUUG-CCACUGu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAACgGGUGAC- -5'
21375 5' -68.3 NC_004812.1 + 276 0.91 0.006115
Target:  5'- cCCCCCCCCCCCCCCCCUcgGCCCcCUc -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAa-CGGGuGAc -5'
21375 5' -68.3 NC_004812.1 + 125784 0.91 0.006115
Target:  5'- cCCCCCCCCCCCCCCCCUcgGCCCcCUc -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAa-CGGGuGAc -5'
21375 5' -68.3 NC_004812.1 + 18629 0.88 0.010701
Target:  5'- cCCCCCCCCCCCCCCCCgacCCCGCc- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaacGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 40383 0.87 0.012783
Target:  5'- cCCCCCCCCCCCCCCCCauUUGCgCGCc- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGG--AACGgGUGac -5'
21375 5' -68.3 NC_004812.1 + 84272 0.87 0.012783
Target:  5'- gCCCCCCCUCCCCCCCgcgGCCCGCc- -3'
miRNA:   3'- gGGGGGGGGGGGGGGGaa-CGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 99357 0.85 0.017773
Target:  5'- gCCCCCCCCCCCCCCagcGCCCGCc- -3'
miRNA:   3'- gGGGGGGGGGGGGGGgaaCGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 127173 0.85 0.018228
Target:  5'- cCCCUCCCCCCCCCCCCgcGUCCGCc- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 1665 0.85 0.018228
Target:  5'- cCCCUCCCCCCCCCCCCgcGUCCGCc- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 116103 0.84 0.019666
Target:  5'- cCCCCCUCCCCUCCCCCgcGCCCGCc- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 1060 0.82 0.031754
Target:  5'- uCCCCCCUCCCCCgCCCCUcccGCCCucCUGg -3'
miRNA:   3'- -GGGGGGGGGGGG-GGGGAa--CGGGu-GAC- -5'
21375 5' -68.3 NC_004812.1 + 38047 0.82 0.031754
Target:  5'- cCCaCCCCCCCCCCCCCCUucUGUUCucguCUGg -3'
miRNA:   3'- -GG-GGGGGGGGGGGGGGA--ACGGGu---GAC- -5'
21375 5' -68.3 NC_004812.1 + 7146 0.82 0.031754
Target:  5'- cCCaCCCCCCCCCCCCCCUucUGUUCucguCUGg -3'
miRNA:   3'- -GG-GGGGGGGGGGGGGGA--ACGGGu---GAC- -5'
21375 5' -68.3 NC_004812.1 + 126569 0.82 0.031754
Target:  5'- uCCCCCCUCCCCCgCCCCUcccGCCCucCUGg -3'
miRNA:   3'- -GGGGGGGGGGGG-GGGGAa--CGGGu-GAC- -5'
21375 5' -68.3 NC_004812.1 + 56495 0.81 0.036915
Target:  5'- gCCUCCCCUCCCCUCCCccGCCCGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 154643 0.8 0.039796
Target:  5'- cCUCCCCCCCUCCCCCCggcGCCCGg-- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaa-CGGGUgac -5'
21375 5' -68.3 NC_004812.1 + 116064 0.8 0.039796
Target:  5'- cCCCCCUCCCCUCCCCCgcGCCCcCUc -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGuGAc -5'
21375 5' -68.3 NC_004812.1 + 115868 0.8 0.039796
Target:  5'- cCCCCCUCCCCUCCCCCgcGCCCcCUc -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGuGAc -5'
21375 5' -68.3 NC_004812.1 + 150481 0.8 0.039796
Target:  5'- cCCCCCCCCCCUCCCCCUccCCCuCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAacGGGuGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.