miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21375 5' -68.3 NC_004812.1 + 146520 0.78 0.056413
Target:  5'- aCCCCCacagcgaCCCCCaCCCCCguguugUGCCCACa- -3'
miRNA:   3'- -GGGGGg------GGGGG-GGGGGa-----ACGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 119187 0.8 0.042896
Target:  5'- gCCCCCCgCCCCCCCC-UGCUC-CUGg -3'
miRNA:   3'- gGGGGGGgGGGGGGGGaACGGGuGAC- -5'
21375 5' -68.3 NC_004812.1 + 138678 0.8 0.045093
Target:  5'- aCCCCCUCUCCCCCCCCgaccggGCCuCGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaa----CGG-GUGac -5'
21375 5' -68.3 NC_004812.1 + 126402 0.8 0.045093
Target:  5'- cCCCCaCCCCCCaCCCCCCUccCCCACg- -3'
miRNA:   3'- -GGGG-GGGGGG-GGGGGGAacGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 29603 0.79 0.0474
Target:  5'- gCUCCCCCCCCCCCgCCCUacCCCACc- -3'
miRNA:   3'- -GGGGGGGGGGGGG-GGGAacGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 150527 0.79 0.049821
Target:  5'- cCCCCUCCCCUCCCUCCUU-CCCACc- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 115926 0.78 0.055031
Target:  5'- cCCCCCUCCCCUCCCCCgcGCCCc--- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGugac -5'
21375 5' -68.3 NC_004812.1 + 115966 0.78 0.055031
Target:  5'- cCCCCCUCCCCUCCCCCgcGCCCc--- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGugac -5'
21375 5' -68.3 NC_004812.1 + 127056 0.78 0.056413
Target:  5'- cCCCCCCCCUUCCCCCCUacGCgCGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAa-CGgGUGac -5'
21375 5' -68.3 NC_004812.1 + 125933 0.8 0.040804
Target:  5'- cCCCUCCCCCCCUCCCCUUcCUCGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 150481 0.8 0.039796
Target:  5'- cCCCCCCCCCCUCCCCCUccCCCuCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAacGGGuGAc -5'
21375 5' -68.3 NC_004812.1 + 154643 0.8 0.039796
Target:  5'- cCUCCCCCCCUCCCCCCggcGCCCGg-- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaa-CGGGUgac -5'
21375 5' -68.3 NC_004812.1 + 125784 0.91 0.006115
Target:  5'- cCCCCCCCCCCCCCCCCUcgGCCCcCUc -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAa-CGGGuGAc -5'
21375 5' -68.3 NC_004812.1 + 127173 0.85 0.018228
Target:  5'- cCCCUCCCCCCCCCCCCgcGUCCGCc- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 116103 0.84 0.019666
Target:  5'- cCCCCCUCCCCUCCCCCgcGCCCGCc- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 126569 0.82 0.031754
Target:  5'- uCCCCCCUCCCCCgCCCCUcccGCCCucCUGg -3'
miRNA:   3'- -GGGGGGGGGGGG-GGGGAa--CGGGu-GAC- -5'
21375 5' -68.3 NC_004812.1 + 7146 0.82 0.031754
Target:  5'- cCCaCCCCCCCCCCCCCCUucUGUUCucguCUGg -3'
miRNA:   3'- -GG-GGGGGGGGGGGGGGA--ACGGGu---GAC- -5'
21375 5' -68.3 NC_004812.1 + 115868 0.8 0.039796
Target:  5'- cCCCCCUCCCCUCCCCCgcGCCCcCUc -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGuGAc -5'
21375 5' -68.3 NC_004812.1 + 116006 0.8 0.039796
Target:  5'- cCCCCCUCCCCUCCCCCgcGCCCcCUc -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGuGAc -5'
21375 5' -68.3 NC_004812.1 + 116064 0.8 0.039796
Target:  5'- cCCCCCUCCCCUCCCCCgcGCCCcCUc -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGuGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.