miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 3' -59 NC_004812.1 + 148412 0.66 0.81053
Target:  5'- gGCCCccggccgCUCUCggCCGGACCCCggCC-Cg -3'
miRNA:   3'- -CGGGaa-----GAGAG--GGUCUGGGGa-GGaGa -5'
21376 3' -59 NC_004812.1 + 117511 0.66 0.81053
Target:  5'- gGCCCccggccgCUCUCggCCGGACCCCggCC-Cg -3'
miRNA:   3'- -CGGGaa-----GAGAG--GGUCUGGGGa-GGaGa -5'
21376 3' -59 NC_004812.1 + 151457 0.66 0.81053
Target:  5'- cGCCCcUCUCUgcuucuggCCCGcGGCCCUcccgCCUCc -3'
miRNA:   3'- -CGGGaAGAGA--------GGGU-CUGGGGa---GGAGa -5'
21376 3' -59 NC_004812.1 + 120556 0.66 0.81053
Target:  5'- cGCCCcUCUCUgcuucuggCCCGcGGCCCUcccgCCUCc -3'
miRNA:   3'- -CGGGaAGAGA--------GGGU-CUGGGGa---GGAGa -5'
21376 3' -59 NC_004812.1 + 128795 0.66 0.801871
Target:  5'- cGCCCgUCgaacccccgCUCCCcccccGGCCCCgcCCUCUc -3'
miRNA:   3'- -CGGGaAGa--------GAGGGu----CUGGGGa-GGAGA- -5'
21376 3' -59 NC_004812.1 + 16917 0.66 0.801871
Target:  5'- aGCUCgccgUCU-CCGGcCCCCUCCUCg -3'
miRNA:   3'- -CGGGaag-AGAgGGUCuGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 39004 0.66 0.801871
Target:  5'- cGCCCcccCUCccccggCCCGGaACCCCgaaaagCCUCg -3'
miRNA:   3'- -CGGGaa-GAGa-----GGGUC-UGGGGa-----GGAGa -5'
21376 3' -59 NC_004812.1 + 8103 0.66 0.801871
Target:  5'- cGCCCcccCUCccccggCCCGGaACCCCgaaaagCCUCg -3'
miRNA:   3'- -CGGGaa-GAGa-----GGGUC-UGGGGa-----GGAGa -5'
21376 3' -59 NC_004812.1 + 54545 0.66 0.801871
Target:  5'- uGCCCggCgcgCCCGGcgcgGCCCCggCCUCg -3'
miRNA:   3'- -CGGGaaGagaGGGUC----UGGGGa-GGAGa -5'
21376 3' -59 NC_004812.1 + 86637 0.66 0.793951
Target:  5'- aCCCgUCUCcaccagagcccccggCCaCAGACCCCcCCUCg -3'
miRNA:   3'- cGGGaAGAGa--------------GG-GUCUGGGGaGGAGa -5'
21376 3' -59 NC_004812.1 + 49840 0.66 0.793065
Target:  5'- cGCCCcg--CUCCgAcgccGCCCCUCCUCc -3'
miRNA:   3'- -CGGGaagaGAGGgUc---UGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 151325 0.66 0.784119
Target:  5'- --gCUUCUcCUCCCGGGCCUCcccccgCCUCc -3'
miRNA:   3'- cggGAAGA-GAGGGUCUGGGGa-----GGAGa -5'
21376 3' -59 NC_004812.1 + 31431 0.66 0.784119
Target:  5'- gGCCCgcgCg--CCCGGGCCCUcccgCCUCc -3'
miRNA:   3'- -CGGGaa-GagaGGGUCUGGGGa---GGAGa -5'
21376 3' -59 NC_004812.1 + 530 0.66 0.784119
Target:  5'- gGCCCgcgCg--CCCGGGCCCUcccgCCUCc -3'
miRNA:   3'- -CGGGaa-GagaGGGUCUGGGGa---GGAGa -5'
21376 3' -59 NC_004812.1 + 120424 0.66 0.784119
Target:  5'- --gCUUCUcCUCCCGGGCCUCcccccgCCUCc -3'
miRNA:   3'- cggGAAGA-GAGGGUCUGGGGa-----GGAGa -5'
21376 3' -59 NC_004812.1 + 80420 0.66 0.784119
Target:  5'- uCCCUUCUUUCCCu--CCCCgCCg-- -3'
miRNA:   3'- cGGGAAGAGAGGGucuGGGGaGGaga -5'
21376 3' -59 NC_004812.1 + 75987 0.66 0.775043
Target:  5'- cGCCCcUCUCcaCCgCGGACCCC-CCa-- -3'
miRNA:   3'- -CGGGaAGAGa-GG-GUCUGGGGaGGaga -5'
21376 3' -59 NC_004812.1 + 89149 0.66 0.775043
Target:  5'- cCCCgcCUCcgUCCUGGugCgCCUCCUCg -3'
miRNA:   3'- cGGGaaGAG--AGGGUCugG-GGAGGAGa -5'
21376 3' -59 NC_004812.1 + 120964 0.66 0.763062
Target:  5'- cGCCUcUCUCucugucuccUCCCGGgcgagcgggcacacGCCCCgUCCUCg -3'
miRNA:   3'- -CGGGaAGAG---------AGGGUC--------------UGGGG-AGGAGa -5'
21376 3' -59 NC_004812.1 + 151865 0.66 0.763062
Target:  5'- cGCCUcUCUCucugucuccUCCCGGgcgagcgggcacacGCCCCgUCCUCg -3'
miRNA:   3'- -CGGGaAGAG---------AGGGUC--------------UGGGG-AGGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.