Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 16126 | 0.7 | 0.698355 |
Target: 5'- -uGGUGGcGGGGGcccCCGUGGuGGGGGCGg -3' miRNA: 3'- ugUCAUC-CCCUCa--GGCACU-CUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 145386 | 0.7 | 0.708323 |
Target: 5'- aACGGcGGGGGAgaugcGUCCGUcgGAG-GAGCGc -3' miRNA: 3'- -UGUCaUCCCCU-----CAGGCA--CUCuCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 45102 | 0.7 | 0.708323 |
Target: 5'- gGCGGgcGGGGGG--CGUGAGucGGGGCGa -3' miRNA: 3'- -UGUCauCCCCUCagGCACUC--UCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 4778 | 0.69 | 0.72806 |
Target: 5'- cGCGGUGGGGGAGggggCgG-GGcGAGGGCu -3' miRNA: 3'- -UGUCAUCCCCUCa---GgCaCU-CUCUCGc -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 16801 | 0.69 | 0.72806 |
Target: 5'- -gGGgcgGGGGGAGUCUG-GAGGacGGGCGc -3' miRNA: 3'- ugUCa--UCCCCUCAGGCaCUCU--CUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 35679 | 0.69 | 0.72806 |
Target: 5'- cGCGGUGGGGGAGggggCgG-GGcGAGGGCu -3' miRNA: 3'- -UGUCAUCCCCUCa---GgCaCU-CUCUCGc -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 45449 | 0.69 | 0.757029 |
Target: 5'- gGCAG-AGGGugguGAGgugCCG-GAGGGAGCGc -3' miRNA: 3'- -UGUCaUCCC----CUCa--GGCaCUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 7942 | 0.69 | 0.757029 |
Target: 5'- cGCGGccgGGGGGcgcGUCCG-GGGGGGGCc -3' miRNA: 3'- -UGUCa--UCCCCu--CAGGCaCUCUCUCGc -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 38843 | 0.69 | 0.757029 |
Target: 5'- cGCGGccGGGGGGcgcGUCCG-GGGGGGGCc -3' miRNA: 3'- -UGUCa-UCCCCU---CAGGCaCUCUCUCGc -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 115525 | 0.69 | 0.757029 |
Target: 5'- aACGGgcGGGGAGUaCGgaGGGGGGGCc -3' miRNA: 3'- -UGUCauCCCCUCAgGCa-CUCUCUCGc -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 40571 | 0.69 | 0.775811 |
Target: 5'- cGCGGgggAGGGGAGggggCgCGggggagggGAGGGGGCGc -3' miRNA: 3'- -UGUCa--UCCCCUCa---G-GCa-------CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 40709 | 0.69 | 0.775811 |
Target: 5'- cGCGGgggAGGGGAGggggCgCGggggagggGAGGGGGCGc -3' miRNA: 3'- -UGUCa--UCCCCUCa---G-GCa-------CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 29230 | 0.69 | 0.775811 |
Target: 5'- gGCGGgcGGGG-GUCgCG-GAG-GAGCGg -3' miRNA: 3'- -UGUCauCCCCuCAG-GCaCUCuCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 5337 | 0.69 | 0.775811 |
Target: 5'- cACGGaggcgGGGGGAGgcCCGgGAGAG-GCGg -3' miRNA: 3'- -UGUCa----UCCCCUCa-GGCaCUCUCuCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 36238 | 0.69 | 0.775811 |
Target: 5'- cACGGaggcgGGGGGAGgcCCGgGAGAG-GCGg -3' miRNA: 3'- -UGUCa----UCCCCUCa-GGCaCUCUCuCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 46654 | 0.69 | 0.775811 |
Target: 5'- ----gGGGuGGGGUCCGUGgccGGGGGGCa -3' miRNA: 3'- ugucaUCC-CCUCAGGCAC---UCUCUCGc -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 154738 | 0.69 | 0.775811 |
Target: 5'- gGCGGgcGGGG-GUCgCG-GAG-GAGCGg -3' miRNA: 3'- -UGUCauCCCCuCAG-GCaCUCuCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 71864 | 0.68 | 0.784102 |
Target: 5'- -gGGaUGGGGGucggccaGGUUgGUGAGAGAGCc -3' miRNA: 3'- ugUC-AUCCCC-------UCAGgCACUCUCUCGc -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 66085 | 0.68 | 0.785017 |
Target: 5'- cGCcGUAGGuGGGGUCCGgguAGaAGAGCa -3' miRNA: 3'- -UGuCAUCC-CCUCAGGCac-UC-UCUCGc -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 104172 | 0.68 | 0.785017 |
Target: 5'- cGCGGgcGGGGGGaugggcggcgaUgCGggGAGGGAGCGa -3' miRNA: 3'- -UGUCauCCCCUC-----------AgGCa-CUCUCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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