miRNA display CGI


Results 21 - 40 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 89227 0.73 0.389602
Target:  5'- --gCGCGGCGgcggaggcccgcgccGCCACGgugucGCAGGCGUg -3'
miRNA:   3'- aaaGCGCCGU---------------UGGUGCa----CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 100795 0.74 0.369777
Target:  5'- --aCGagaGGCGcugcGCCGCGUGCuGGCGCGu -3'
miRNA:   3'- aaaGCg--CCGU----UGGUGCACGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 156113 0.75 0.301761
Target:  5'- --cCGCGGCGGCCGugaguuCGggcaGCAGGCGCGu -3'
miRNA:   3'- aaaGCGCCGUUGGU------GCa---CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 31467 0.78 0.190583
Target:  5'- --gCGCGcGCGGCCGCGUggagccGCGGGCGCGg -3'
miRNA:   3'- aaaGCGC-CGUUGGUGCA------CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 107693 0.71 0.52372
Target:  5'- --gCGUGGCGACCACG-GCGuGGCccGCGa -3'
miRNA:   3'- aaaGCGCCGUUGGUGCaCGU-CCG--CGU- -5'
21382 3' -58 NC_004812.1 + 3707 0.72 0.475442
Target:  5'- -gUCgGCGGCGGCgGCGccgGCGGaGCGCAc -3'
miRNA:   3'- aaAG-CGCCGUUGgUGCa--CGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 4564 0.74 0.369777
Target:  5'- -cUCGCGGuCGGgCGCGaagaGCAGGCGCGu -3'
miRNA:   3'- aaAGCGCC-GUUgGUGCa---CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 152753 0.79 0.181244
Target:  5'- --cCGCGGCGGCCGCG-GCGaccacGGCGCAg -3'
miRNA:   3'- aaaGCGCCGUUGGUGCaCGU-----CCGCGU- -5'
21382 3' -58 NC_004812.1 + 30943 0.72 0.46605
Target:  5'- --gCGCGGCgGGCCGCGggcGCGgcGGCGCGg -3'
miRNA:   3'- aaaGCGCCG-UUGGUGCa--CGU--CCGCGU- -5'
21382 3' -58 NC_004812.1 + 109715 0.81 0.136825
Target:  5'- --gCGCuGGCGGCCGCGcuggGCAGGCGCGa -3'
miRNA:   3'- aaaGCG-CCGUUGGUGCa---CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 48092 0.74 0.369777
Target:  5'- -cUCgGCGGCcGCCGCcgugcgccccGUGCGGGCGCu -3'
miRNA:   3'- aaAG-CGCCGuUGGUG----------CACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 35695 0.73 0.411848
Target:  5'- --gCGgGGCGAgggCugGUGCGGGCGCGg -3'
miRNA:   3'- aaaGCgCCGUUg--GugCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 47289 0.75 0.313113
Target:  5'- --gCGCGGCGccgccuccagcgccGCCggcgcguACGUGCGGGCGCGc -3'
miRNA:   3'- aaaGCGCCGU--------------UGG-------UGCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 119487 0.75 0.301761
Target:  5'- --cCGCGGCGGCCGac-GCGGGCGCc -3'
miRNA:   3'- aaaGCGCCGUUGGUgcaCGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 18434 0.77 0.249759
Target:  5'- --gCGCGGCGgggGCCGCGUccGguGGCGCGg -3'
miRNA:   3'- aaaGCGCCGU---UGGUGCA--CguCCGCGU- -5'
21382 3' -58 NC_004812.1 + 3584 0.78 0.210532
Target:  5'- ---gGCGGCGGCgGCGgGCGGGCGCGc -3'
miRNA:   3'- aaagCGCCGUUGgUGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 53261 0.7 0.543561
Target:  5'- --gUGuuGCGACCugGaGCAGGCGCGc -3'
miRNA:   3'- aaaGCgcCGUUGGugCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 156159 0.71 0.532616
Target:  5'- --gCGcCGGCGGCCcgggcucGCG-GCGGGCGCGc -3'
miRNA:   3'- aaaGC-GCCGUUGG-------UGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 80473 0.71 0.494503
Target:  5'- -gUCGCGGCGA-CGCG-GCGGcGCGCc -3'
miRNA:   3'- aaAGCGCCGUUgGUGCaCGUC-CGCGu -5'
21382 3' -58 NC_004812.1 + 5581 0.72 0.475442
Target:  5'- gUUCGCGGCGGCC-CGUcgGCGGGguccUGCGa -3'
miRNA:   3'- aAAGCGCCGUUGGuGCA--CGUCC----GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.