Results 1 - 20 of 366 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21382 | 5' | -59.3 | NC_004812.1 | + | 142290 | 1.08 | 0.001381 |
Target: 5'- cAGCACCCCUACACCCUGGCCAGCAACc -3' miRNA: 3'- -UCGUGGGGAUGUGGGACCGGUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 8047 | 0.81 | 0.114444 |
Target: 5'- cGGCACCCCccgGCGCCCggccGGCCcGCGACc -3' miRNA: 3'- -UCGUGGGGa--UGUGGGa---CCGGuCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 38948 | 0.81 | 0.114444 |
Target: 5'- cGGCACCCCccgGCGCCCggccGGCCcGCGACc -3' miRNA: 3'- -UCGUGGGGa--UGUGGGa---CCGGuCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 59779 | 0.8 | 0.126935 |
Target: 5'- cGCACCgCUcgagguagaacaGCAUCUUGGCCAGCAGCg -3' miRNA: 3'- uCGUGGgGA------------UGUGGGACCGGUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 51317 | 0.79 | 0.151865 |
Target: 5'- gGGCAgCCCUACGCCCaGGCCAGg--- -3' miRNA: 3'- -UCGUgGGGAUGUGGGaCCGGUCguug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 56263 | 0.78 | 0.181162 |
Target: 5'- cGCGCCCCUGCGCCUc-GCCcGCGGCg -3' miRNA: 3'- uCGUGGGGAUGUGGGacCGGuCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 150242 | 0.77 | 0.195187 |
Target: 5'- cGCugCCC-GCGuCCCUGGCgGGCGGCg -3' miRNA: 3'- uCGugGGGaUGU-GGGACCGgUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 119341 | 0.77 | 0.195187 |
Target: 5'- cGCugCCC-GCGuCCCUGGCgGGCGGCg -3' miRNA: 3'- uCGugGGGaUGU-GGGACCGgUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 142405 | 0.77 | 0.195187 |
Target: 5'- gGGCGCCCg---GCCCUGGCgCGGCGACg -3' miRNA: 3'- -UCGUGGGgaugUGGGACCG-GUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 55396 | 0.76 | 0.215882 |
Target: 5'- cGGCGCCCCUGCuggcggccgcggggcCCCUGGCCccGCAGa -3' miRNA: 3'- -UCGUGGGGAUGu--------------GGGACCGGu-CGUUg -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 78776 | 0.76 | 0.22067 |
Target: 5'- cGGCGCCCUggACGCCCUGGCgCGG-GGCg -3' miRNA: 3'- -UCGUGGGGa-UGUGGGACCG-GUCgUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 85126 | 0.76 | 0.226095 |
Target: 5'- uGCuGCCCCUGCugcCCCUGcGCCcGCAGCa -3' miRNA: 3'- uCG-UGGGGAUGu--GGGAC-CGGuCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 80237 | 0.75 | 0.254935 |
Target: 5'- cGCGCCUCgGCGCCCUGGgggCGGCGGCc -3' miRNA: 3'- uCGUGGGGaUGUGGGACCg--GUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 88388 | 0.75 | 0.280127 |
Target: 5'- cGGC-CCCCgcGCACCCccGGCCGGCcGCg -3' miRNA: 3'- -UCGuGGGGa-UGUGGGa-CCGGUCGuUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 142244 | 0.75 | 0.280127 |
Target: 5'- uGCGCCgCC-GCGCCCgcgcGGCCGGCAAg -3' miRNA: 3'- uCGUGG-GGaUGUGGGa---CCGGUCGUUg -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 135600 | 0.75 | 0.280127 |
Target: 5'- uGCACCCCcGCgGCCgaGGCgCGGCGGCg -3' miRNA: 3'- uCGUGGGGaUG-UGGgaCCG-GUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 40221 | 0.74 | 0.286726 |
Target: 5'- cGGCgACCgCCcGCGC-CUGGCCGGCGGCg -3' miRNA: 3'- -UCG-UGG-GGaUGUGgGACCGGUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 140101 | 0.74 | 0.293447 |
Target: 5'- gAGCgcaucGCCCCcGCGCCCcccGGCCGGUGGCg -3' miRNA: 3'- -UCG-----UGGGGaUGUGGGa--CCGGUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 145450 | 0.74 | 0.307257 |
Target: 5'- uGGCACCgaCCUACAUucgCCUGGCCGaCGACg -3' miRNA: 3'- -UCGUGG--GGAUGUG---GGACCGGUcGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 117327 | 0.74 | 0.307257 |
Target: 5'- cGCGCCCCcGgACCCcgGGCCccGGCGGCc -3' miRNA: 3'- uCGUGGGGaUgUGGGa-CCGG--UCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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