miRNA display CGI


Results 21 - 40 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 71097 0.72 0.395306
Target:  5'- aGGCGCCCaaACACCCgcuccagGGCCgacuccagcccccgcGGCGGCa -3'
miRNA:   3'- -UCGUGGGgaUGUGGGa------CCGG---------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 55979 0.72 0.383652
Target:  5'- cGCGCCgCCgUGCGCgcgauCCUGGCCGGCGc- -3'
miRNA:   3'- uCGUGG-GG-AUGUG-----GGACCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 49865 0.73 0.339368
Target:  5'- gAGCGCCCCaugACguaguaggccucgucGCCCUcgccGCCAGCAGCa -3'
miRNA:   3'- -UCGUGGGGa--UG---------------UGGGAc---CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 55396 0.76 0.215882
Target:  5'- cGGCGCCCCUGCuggcggccgcggggcCCCUGGCCccGCAGa -3'
miRNA:   3'- -UCGUGGGGAUGu--------------GGGACCGGu-CGUUg -5'
21382 5' -59.3 NC_004812.1 + 20518 0.71 0.453204
Target:  5'- gGGCACCCCcgucgucgUGCGCUC-GGCCGaccuGCGGCg -3'
miRNA:   3'- -UCGUGGGG--------AUGUGGGaCCGGU----CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 37208 0.72 0.417546
Target:  5'- cGGCGCCCCcggGCACgCggggGGCCccgggcaggaggGGCAGCa -3'
miRNA:   3'- -UCGUGGGGa--UGUGgGa---CCGG------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 28075 0.72 0.378727
Target:  5'- gGGCaaccGCCUCUGCggGCCCgacacggccgccugGGCCGGCAACu -3'
miRNA:   3'- -UCG----UGGGGAUG--UGGGa-------------CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 150242 0.77 0.195187
Target:  5'- cGCugCCC-GCGuCCCUGGCgGGCGGCg -3'
miRNA:   3'- uCGugGGGaUGU-GGGACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 19806 0.72 0.417546
Target:  5'- gGGCgGCUCCUcgcugcugcGCAUCUcGGCCAGCAGCu -3'
miRNA:   3'- -UCG-UGGGGA---------UGUGGGaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 38948 0.81 0.114444
Target:  5'- cGGCACCCCccgGCGCCCggccGGCCcGCGACc -3'
miRNA:   3'- -UCGUGGGGa--UGUGGGa---CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 75246 0.72 0.383652
Target:  5'- aAGCGCgCCCUcacggcCGCCCUGGCgGGCcuGCg -3'
miRNA:   3'- -UCGUG-GGGAu-----GUGGGACCGgUCGu-UG- -5'
21382 5' -59.3 NC_004812.1 + 105079 0.72 0.40037
Target:  5'- uGGCcCCCCgGCGCCgCUGcGCCGGgGGCg -3'
miRNA:   3'- -UCGuGGGGaUGUGG-GAC-CGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 103604 0.72 0.374656
Target:  5'- cGCGCCCCgggACGugcuacagccgccCCCUGGUCAGCuuCc -3'
miRNA:   3'- uCGUGGGGa--UGU-------------GGGACCGGUCGuuG- -5'
21382 5' -59.3 NC_004812.1 + 62323 0.73 0.343931
Target:  5'- cGCACCCaggcgcACGCCCgGGCC-GCGGCg -3'
miRNA:   3'- uCGUGGGga----UGUGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 88388 0.75 0.280127
Target:  5'- cGGC-CCCCgcGCACCCccGGCCGGCcGCg -3'
miRNA:   3'- -UCGuGGGGa-UGUGGGa-CCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 78776 0.76 0.22067
Target:  5'- cGGCGCCCUggACGCCCUGGCgCGG-GGCg -3'
miRNA:   3'- -UCGUGGGGa-UGUGGGACCG-GUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 120352 0.7 0.469782
Target:  5'- cGcCGCCCCUGCaACCCgcgggggcgcgcGGCCGGgGGCg -3'
miRNA:   3'- uC-GUGGGGAUG-UGGGa-----------CCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 78136 0.71 0.453204
Target:  5'- cGCGCCUCgcgGCGCaCgaGGCCGGCAu- -3'
miRNA:   3'- uCGUGGGGa--UGUG-GgaCCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 26301 0.71 0.431606
Target:  5'- gGGCGCCuUCUACGCCCgcuaccgcgacggGuacGCCAGCGGCg -3'
miRNA:   3'- -UCGUGG-GGAUGUGGGa------------C---CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 90193 0.71 0.426301
Target:  5'- cGCugCCCUucgaccuggagcGCACCgUGGCCGaCAACu -3'
miRNA:   3'- uCGugGGGA------------UGUGGgACCGGUcGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.