Results 21 - 40 of 550 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21383 | 3' | -58.1 | NC_004812.1 | + | 31598 | 0.66 | 0.834784 |
Target: 5'- -gGACGGgCCGCG-CGccGCGCaggGGCGCc -3' miRNA: 3'- gaCUGCCaGGCGUaGC--UGUGg--CCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 67468 | 0.66 | 0.850505 |
Target: 5'- -cGGCGuGUCCccacGCGUCcGCggGCUGGCGCc -3' miRNA: 3'- gaCUGC-CAGG----CGUAGcUG--UGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 41960 | 0.66 | 0.833979 |
Target: 5'- gUGGCGGgCCGCAcCGACguccucaucacggGCCaGCGUu -3' miRNA: 3'- gACUGCCaGGCGUaGCUG-------------UGGcCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 15966 | 0.66 | 0.849736 |
Target: 5'- -cGACGGacgccCCGCGgccggCGGCGCCGaccccgcggccccGCGCc -3' miRNA: 3'- gaCUGCCa----GGCGUa----GCUGUGGC-------------CGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 121895 | 0.66 | 0.842735 |
Target: 5'- -gGGCGGggCCGCA--GGC-CgGGCGCg -3' miRNA: 3'- gaCUGCCa-GGCGUagCUGuGgCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 136490 | 0.66 | 0.864749 |
Target: 5'- ---cCGGUCCGCucccccgCGcgccgcuGCGCgCGGCGCg -3' miRNA: 3'- gacuGCCAGGCGua-----GC-------UGUG-GCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 46308 | 0.66 | 0.842735 |
Target: 5'- -cGGCGGgCCGCGcgggCGACAgCCGcCGCc -3' miRNA: 3'- gaCUGCCaGGCGUa---GCUGU-GGCcGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 155487 | 0.66 | 0.842735 |
Target: 5'- cCUGGCGGcCgGCuUCugccuCGCCGGCGg -3' miRNA: 3'- -GACUGCCaGgCGuAGcu---GUGGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 129088 | 0.66 | 0.834784 |
Target: 5'- -aGGCGG-CgGCggCGGCggGCgGGCGCg -3' miRNA: 3'- gaCUGCCaGgCGuaGCUG--UGgCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 131528 | 0.66 | 0.834784 |
Target: 5'- -cGGCGGcgCCGCcccGUCGAggagccCGCCGccGCGCg -3' miRNA: 3'- gaCUGCCa-GGCG---UAGCU------GUGGC--CGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 20289 | 0.66 | 0.850505 |
Target: 5'- -cGGgGGUggGCggCG-CGCCGGCGCa -3' miRNA: 3'- gaCUgCCAggCGuaGCuGUGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 30962 | 0.66 | 0.850505 |
Target: 5'- -cGAgGGUCagguaCGCcgCGACGuuGGCGg -3' miRNA: 3'- gaCUgCCAG-----GCGuaGCUGUggCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 19767 | 0.66 | 0.834784 |
Target: 5'- -cGGgGGUCCcagGCGaCGcGCGCCGGgGCg -3' miRNA: 3'- gaCUgCCAGG---CGUaGC-UGUGGCCgCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 49254 | 0.66 | 0.842735 |
Target: 5'- -gGGC-GUCCGgGgcCGACuCCGGCGCc -3' miRNA: 3'- gaCUGcCAGGCgUa-GCUGuGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 154234 | 0.66 | 0.850505 |
Target: 5'- cCUGGCgcuGGaCCGC---GACGCCGcGCGCg -3' miRNA: 3'- -GACUG---CCaGGCGuagCUGUGGC-CGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 96203 | 0.66 | 0.842735 |
Target: 5'- ----gGGUCCagacgcGCGUCGACGCgCaGCGCa -3' miRNA: 3'- gacugCCAGG------CGUAGCUGUG-GcCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 136174 | 0.66 | 0.834784 |
Target: 5'- uUGGC-GUCCGCG--GACGuCCGGgGCa -3' miRNA: 3'- gACUGcCAGGCGUagCUGU-GGCCgCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 150707 | 0.66 | 0.858088 |
Target: 5'- -cGGCGGcUCCGCc----CGCCGGCGg -3' miRNA: 3'- gaCUGCC-AGGCGuagcuGUGGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 101918 | 0.66 | 0.850505 |
Target: 5'- -cGGCGGUCgGgCcUCggggccccgGACGCgCGGCGCg -3' miRNA: 3'- gaCUGCCAGgC-GuAG---------CUGUG-GCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 117179 | 0.66 | 0.855833 |
Target: 5'- -gGGCGGUcgCCGCggCGACcgggauaaaaggcaGCCGGCu- -3' miRNA: 3'- gaCUGCCA--GGCGuaGCUG--------------UGGCCGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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