miRNA display CGI


Results 21 - 40 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 153304 0.7 0.648625
Target:  5'- cCUGGCGcG-CCGCGcucgccuUCGAC-CCGcGCGCg -3'
miRNA:   3'- -GACUGC-CaGGCGU-------AGCUGuGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 153179 0.69 0.702845
Target:  5'- -cGGCGGcuggcgCCGCGUgcCGccggggcccagccacACGCCGGCGCc -3'
miRNA:   3'- gaCUGCCa-----GGCGUA--GC---------------UGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 152978 0.75 0.364771
Target:  5'- -gGGCGGcgCCGCG-CGccCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGUaGCu-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 152876 0.67 0.809916
Target:  5'- gCUGgcgcGCGGcCCGCGccaggugCGcucCGCCGGCGCc -3'
miRNA:   3'- -GAC----UGCCaGGCGUa------GCu--GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 152816 0.66 0.865479
Target:  5'- -cGA-GG-CCGcCGUCGcCGCCGuGCGCg -3'
miRNA:   3'- gaCUgCCaGGC-GUAGCuGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 152796 0.66 0.842735
Target:  5'- -gGGCGGggCCGCA--GGC-CgGGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGUagCUGuGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 152783 0.75 0.396838
Target:  5'- cCUGcGCGGggaccUCCGCGUCGcCGgCGGCGCc -3'
miRNA:   3'- -GAC-UGCC-----AGGCGUAGCuGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 152756 0.75 0.396838
Target:  5'- -cGGCGG-CCGCggCGAC-CaCGGCGCa -3'
miRNA:   3'- gaCUGCCaGGCGuaGCUGuG-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 152670 0.7 0.629741
Target:  5'- gCUGGCGG-CCGCG-CG-CGCCGuGcCGCg -3'
miRNA:   3'- -GACUGCCaGGCGUaGCuGUGGC-C-GCG- -5'
21383 3' -58.1 NC_004812.1 + 152475 0.74 0.43938
Target:  5'- cCUGGCGG-CCGCccucucCGACgagggccccGCCGGCGCc -3'
miRNA:   3'- -GACUGCCaGGCGua----GCUG---------UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 152223 0.67 0.818367
Target:  5'- -cGcCGG-CCGCuUCGGCugggGCCuGGCGCa -3'
miRNA:   3'- gaCuGCCaGGCGuAGCUG----UGG-CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 151918 0.78 0.249207
Target:  5'- -cGGCGGgCCGgGggcgcuccccUCGGCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCaGGCgU----------AGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 151833 0.67 0.809916
Target:  5'- -cGACGGguaCGCcagCGGCGagccguggcCCGGCGCc -3'
miRNA:   3'- gaCUGCCag-GCGua-GCUGU---------GGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 151696 0.66 0.865479
Target:  5'- ---cCGGgCCGCAgCGAgCGgCGGCGCg -3'
miRNA:   3'- gacuGCCaGGCGUaGCU-GUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 151381 0.75 0.380578
Target:  5'- -cGACGG-CCGCGaggcCGACGCCGGCu- -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGUGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 151349 0.68 0.756289
Target:  5'- --cGCGGggCCGCggCGGCcgACuCGGCGCg -3'
miRNA:   3'- gacUGCCa-GGCGuaGCUG--UG-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 151250 0.68 0.737498
Target:  5'- gUGugGGUC---AUCGACGCCGccGCGCc -3'
miRNA:   3'- gACugCCAGgcgUAGCUGUGGC--CGCG- -5'
21383 3' -58.1 NC_004812.1 + 151036 0.68 0.746941
Target:  5'- -cGACGGgCCGCcgCGAaCGCCGGa-- -3'
miRNA:   3'- gaCUGCCaGGCGuaGCU-GUGGCCgcg -5'
21383 3' -58.1 NC_004812.1 + 150866 0.71 0.560585
Target:  5'- cCUGugGGcCUGgG-CGGCGCCcGGCGCc -3'
miRNA:   3'- -GACugCCaGGCgUaGCUGUGG-CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 150707 0.66 0.858088
Target:  5'- -cGGCGGcUCCGCc----CGCCGGCGg -3'
miRNA:   3'- gaCUGCC-AGGCGuagcuGUGGCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.