Results 21 - 40 of 457 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21384 | 5' | -55 | NC_004812.1 | + | 145815 | 0.76 | 0.438365 |
Target: 5'- gUGUGGGCGGcGggGucGGCgGCCCACGCCc -3' miRNA: 3'- -ACGUCUGCCaCuuC--UCG-UGGGUGUGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 79332 | 0.75 | 0.475468 |
Target: 5'- aGCGGACGGUGcggcGGAGCucgGgCCugGCCg -3' miRNA: 3'- aCGUCUGCCACu---UCUCG---UgGGugUGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 8694 | 0.75 | 0.484988 |
Target: 5'- gGcCGGGCGGgGAAGAGCACUCagcuuguuuACGCCa -3' miRNA: 3'- aC-GUCUGCCaCUUCUCGUGGG---------UGUGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 39595 | 0.75 | 0.484988 |
Target: 5'- gGcCGGGCGGgGAAGAGCACUCagcuuguuuACGCCa -3' miRNA: 3'- aC-GUCUGCCaCUUCUCGUGGG---------UGUGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 108287 | 0.75 | 0.475468 |
Target: 5'- gGCGGGCGGgGucGGGCACC-ACGCCc -3' miRNA: 3'- aCGUCUGCCaCuuCUCGUGGgUGUGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 149039 | 0.75 | 0.466042 |
Target: 5'- aUGCcGGCGGUGggG-GCGggaccgcccCCCGCGCCc -3' miRNA: 3'- -ACGuCUGCCACuuCuCGU---------GGGUGUGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 110655 | 0.75 | 0.494597 |
Target: 5'- cGCGGGCGGgGAGGGGUcggagACCCAauaACCu -3' miRNA: 3'- aCGUCUGCCaCUUCUCG-----UGGGUg--UGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 61584 | 0.75 | 0.475468 |
Target: 5'- cGCGGauccgGCGGUGGAGccccAGCACCUGCGCg -3' miRNA: 3'- aCGUC-----UGCCACUUC----UCGUGGGUGUGg -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 23531 | 0.75 | 0.466042 |
Target: 5'- aUGCcGGCGGUGggG-GCGggaccgcccCCCGCGCCc -3' miRNA: 3'- -ACGuCUGCCACuuCuCGU---------GGGUGUGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 155381 | 0.75 | 0.504293 |
Target: 5'- cGCccGGGCGGgGAGGAGCcCCCgcgGCGCCg -3' miRNA: 3'- aCG--UCUGCCaCUUCUCGuGGG---UGUGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 124480 | 0.75 | 0.504293 |
Target: 5'- cGCccGGGCGGgGAGGAGCcCCCgcgGCGCCg -3' miRNA: 3'- aCG--UCUGCCaCUUCUCGuGGG---UGUGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 136500 | 0.75 | 0.494597 |
Target: 5'- cGUcuGGGCGGaGGAGAGCAUCUGCGCUa -3' miRNA: 3'- aCG--UCUGCCaCUUCUCGUGGGUGUGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 138043 | 0.75 | 0.504293 |
Target: 5'- gGCGGcgGCGGcgGcGGAGCggGCCCGCGCCg -3' miRNA: 3'- aCGUC--UGCCa-CuUCUCG--UGGGUGUGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 77133 | 0.74 | 0.532852 |
Target: 5'- gGCGGuCGGUGAGGAgGCcgggcggGCCCcCGCCg -3' miRNA: 3'- aCGUCuGCCACUUCU-CG-------UGGGuGUGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 19890 | 0.74 | 0.563994 |
Target: 5'- gGCGcGGCGGcgGggGAcGCggcgGCCCGCGCCg -3' miRNA: 3'- aCGU-CUGCCa-CuuCU-CG----UGGGUGUGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 127514 | 0.74 | 0.574148 |
Target: 5'- cGCcGGCGGUcgcucGGGGCGCCgACGCCg -3' miRNA: 3'- aCGuCUGCCAcu---UCUCGUGGgUGUGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 130929 | 0.74 | 0.563994 |
Target: 5'- cGCGgacGACGGcGggGAcaGCGCCCGgGCCg -3' miRNA: 3'- aCGU---CUGCCaCuuCU--CGUGGGUgUGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 97323 | 0.74 | 0.563994 |
Target: 5'- gGCGGGCgGGUGccGcGCGCCCGCgACCc -3' miRNA: 3'- aCGUCUG-CCACuuCuCGUGGGUG-UGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 74521 | 0.74 | 0.540834 |
Target: 5'- aGCAGGCGGcccagGGcgucGGcguucaucucccacGGCACCCGCGCCa -3' miRNA: 3'- aCGUCUGCCa----CU----UC--------------UCGUGGGUGUGG- -5' |
|||||||
21384 | 5' | -55 | NC_004812.1 | + | 112895 | 0.74 | 0.543838 |
Target: 5'- gGCGagacGACGGcGAcGGAGCGCCCuCGCCg -3' miRNA: 3'- aCGU----CUGCCaCU-UCUCGUGGGuGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home