miRNA display CGI


Results 1 - 20 of 534 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 3' -64.7 NC_004812.1 + 109296 0.65 0.578661
Target:  5'- aCCUgCGCGCCCGcacguacGCGCCggcggcgCUggaggcggcgCCGCGc -3'
miRNA:   3'- -GGAgGCGCGGGU-------CGCGGa------GGa---------GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 55626 0.65 0.578661
Target:  5'- -gUCCGCGUacagccgCCGGCGCUcgcggaCgUCCGCGg -3'
miRNA:   3'- ggAGGCGCG-------GGUCGCGGa-----GgAGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 92448 0.65 0.578661
Target:  5'- cCCUcCCGCgcggaGCCCGccGCGCCgCCguccccgaucgcgUCCGCGu -3'
miRNA:   3'- -GGA-GGCG-----CGGGU--CGCGGaGG-------------AGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 4674 0.66 0.529073
Target:  5'- gCCgUCGCGCgCCGGCGCCgaggggagcgcccCCggcccgCCGCGc -3'
miRNA:   3'- -GGaGGCGCG-GGUCGCGGa------------GGa-----GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 49041 0.66 0.532766
Target:  5'- --aCCGCGCCgCcGcCGCCuUCCUgagCCGCGg -3'
miRNA:   3'- ggaGGCGCGG-GuC-GCGG-AGGA---GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 127937 0.66 0.539251
Target:  5'- cCCagCGCGCgCAggcgcggugcgaguGCGCCUCg-CCGCGg -3'
miRNA:   3'- -GGagGCGCGgGU--------------CGCGGAGgaGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 153408 0.66 0.523551
Target:  5'- gCCUCgG-GCCCGcuGCGCCgcgCCgCCGCc -3'
miRNA:   3'- -GGAGgCgCGGGU--CGCGGa--GGaGGCGc -5'
21385 3' -64.7 NC_004812.1 + 74856 0.66 0.542038
Target:  5'- gCCUCCagcgaGCGCCgCAGggcgGCCgUCCggcgCCGCGu -3'
miRNA:   3'- -GGAGG-----CGCGG-GUCg---CGG-AGGa---GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 98403 0.66 0.551363
Target:  5'- gCCgcggggCgGCGCCgCAGCGUCUCggugcggcggCCGCGg -3'
miRNA:   3'- -GGa-----GgCGCGG-GUCGCGGAGga--------GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 43778 0.66 0.523551
Target:  5'- gCCgaggCCaCGCCCuGCGUCUUCUgCGCc -3'
miRNA:   3'- -GGa---GGcGCGGGuCGCGGAGGAgGCGc -5'
21385 3' -64.7 NC_004812.1 + 30373 0.66 0.551363
Target:  5'- gCUCgGCGgCCgggucGGgGCuCUCCUCCGgGg -3'
miRNA:   3'- gGAGgCGCgGG-----UCgCG-GAGGAGGCgC- -5'
21385 3' -64.7 NC_004812.1 + 120378 0.66 0.532766
Target:  5'- gCCUCCcccCGCCUccGUGCC-CCUgCCGCGc -3'
miRNA:   3'- -GGAGGc--GCGGGu-CGCGGaGGA-GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 120438 0.66 0.532766
Target:  5'- gCCUCCcccCGCCUccGUGCC-CCUgCCGCGc -3'
miRNA:   3'- -GGAGGc--GCGGGu-CGCGGaGGA-GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 77785 0.66 0.542038
Target:  5'- aCCgCCGCcacggucagggGCCCGcuGCGCCUCgCgaCCGCGu -3'
miRNA:   3'- -GGaGGCG-----------CGGGU--CGCGGAG-Ga-GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 1098 0.66 0.532766
Target:  5'- uCCUCC-UGCCCGGCGgCCcgggUCgCUUCGCc -3'
miRNA:   3'- -GGAGGcGCGGGUCGC-GG----AG-GAGGCGc -5'
21385 3' -64.7 NC_004812.1 + 140581 0.66 0.539251
Target:  5'- gCCUCUGCGCgcugacccuggccgCCaugGGCGCCggcgcCCUCCuGCa -3'
miRNA:   3'- -GGAGGCGCG--------------GG---UCGCGGa----GGAGG-CGc -5'
21385 3' -64.7 NC_004812.1 + 98820 0.66 0.532766
Target:  5'- gCUCCGuCG-CCAGCGCCgCCUCgaaccaCGCc -3'
miRNA:   3'- gGAGGC-GCgGGUCGCGGaGGAG------GCGc -5'
21385 3' -64.7 NC_004812.1 + 34395 0.66 0.542038
Target:  5'- cCCUCC-CGUCUcGCGCCccuUCUUUCGUGg -3'
miRNA:   3'- -GGAGGcGCGGGuCGCGG---AGGAGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 77832 0.66 0.542038
Target:  5'- gCC-CCGCGCCaggcguccagGGCGCCgcgcaCCUCC-CGg -3'
miRNA:   3'- -GGaGGCGCGGg---------UCGCGGa----GGAGGcGC- -5'
21385 3' -64.7 NC_004812.1 + 48961 0.66 0.542038
Target:  5'- gCCggCCGCcCCCGGCGaCgugCC-CCGCGa -3'
miRNA:   3'- -GGa-GGCGcGGGUCGCgGa--GGaGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.