miRNA display CGI


Results 1 - 20 of 534 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 3' -64.7 NC_004812.1 + 19994 0.75 0.151341
Target:  5'- aCCUCggcaaaGCGCgCGGCGCCgUCUCCGCGc -3'
miRNA:   3'- -GGAGg-----CGCGgGUCGCGGaGGAGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 68387 0.77 0.121781
Target:  5'- gCCcCCGcCGCCCAGcCGCCgUCCggggCCGCGg -3'
miRNA:   3'- -GGaGGC-GCGGGUC-GCGG-AGGa---GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 69569 0.76 0.127847
Target:  5'- gCCggCCGCGCCgCAGcCGCCUCCgagCGCGa -3'
miRNA:   3'- -GGa-GGCGCGG-GUC-GCGGAGGag-GCGC- -5'
21385 3' -64.7 NC_004812.1 + 31881 0.76 0.140826
Target:  5'- gUCUCCccCGgCCAGCGCCUCCcacCCGCGg -3'
miRNA:   3'- -GGAGGc-GCgGGUCGCGGAGGa--GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 95990 0.76 0.140826
Target:  5'- aCCUCUGgauccgggggccCGCCgAGCGCCcCCUCCGCu -3'
miRNA:   3'- -GGAGGC------------GCGGgUCGCGGaGGAGGCGc -5'
21385 3' -64.7 NC_004812.1 + 4077 0.76 0.144254
Target:  5'- uCCUCCGcCGgCC-GCGCCgCCUCCGCc -3'
miRNA:   3'- -GGAGGC-GCgGGuCGCGGaGGAGGCGc -5'
21385 3' -64.7 NC_004812.1 + 119508 0.76 0.144254
Target:  5'- gCgUCCGCgggccGCCgGGCGCCccgggCCUCCGCGa -3'
miRNA:   3'- -GgAGGCG-----CGGgUCGCGGa----GGAGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 105021 0.76 0.147759
Target:  5'- gCC-CCGCGgugccgacugaCCCGGCGCCUCCggCUGCGc -3'
miRNA:   3'- -GGaGGCGC-----------GGGUCGCGGAGGa-GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 61994 0.75 0.151341
Target:  5'- cUCUCCGCGCCCAggggccGCGgCUCgaCCGCa -3'
miRNA:   3'- -GGAGGCGCGGGU------CGCgGAGgaGGCGc -5'
21385 3' -64.7 NC_004812.1 + 153888 0.77 0.118849
Target:  5'- aCCUgcgCCGCGCCguGCugGCCUCCggCCGCGu -3'
miRNA:   3'- -GGA---GGCGCGGguCG--CGGAGGa-GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 12977 0.77 0.115983
Target:  5'- gCUCCGCGCCCGGgGCCgCgCUCgCGCu -3'
miRNA:   3'- gGAGGCGCGGGUCgCGGaG-GAG-GCGc -5'
21385 3' -64.7 NC_004812.1 + 45965 0.77 0.113181
Target:  5'- cCCUCCcCGCCC-GCGUCUCCgccCCGCGc -3'
miRNA:   3'- -GGAGGcGCGGGuCGCGGAGGa--GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 4023 0.79 0.083332
Target:  5'- uCCUCCGCGUCCucucGCGCCgcccgccgcuccgCCUCCGCc -3'
miRNA:   3'- -GGAGGCGCGGGu---CGCGGa------------GGAGGCGc -5'
21385 3' -64.7 NC_004812.1 + 18295 0.78 0.092949
Target:  5'- uCCUCCGCGCC-GGCGCCacccUCCgagcccgCCGCGa -3'
miRNA:   3'- -GGAGGCGCGGgUCGCGG----AGGa------GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 18134 0.78 0.09766
Target:  5'- gCUCCGCGUCCAGCaggGCC-CCgCCGCGa -3'
miRNA:   3'- gGAGGCGCGGGUCG---CGGaGGaGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 152717 0.78 0.1001
Target:  5'- gCCgCCGCGCCC-GCGCCUCUggCUGCGc -3'
miRNA:   3'- -GGaGGCGCGGGuCGCGGAGGa-GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 55713 0.78 0.101091
Target:  5'- gUCUCCGCGCCCcgccucgggggccgcGGCGcCCUCCcCCGCc -3'
miRNA:   3'- -GGAGGCGCGGG---------------UCGC-GGAGGaGGCGc -5'
21385 3' -64.7 NC_004812.1 + 127232 0.78 0.102596
Target:  5'- aCUCCGCccgGCCCcGCGCg-CCUCCGCGg -3'
miRNA:   3'- gGAGGCG---CGGGuCGCGgaGGAGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 77002 0.78 0.105152
Target:  5'- gCCUCgGCGCgCGcgcGCGCCUCCUCCaGCa -3'
miRNA:   3'- -GGAGgCGCGgGU---CGCGGAGGAGG-CGc -5'
21385 3' -64.7 NC_004812.1 + 120204 0.78 0.105152
Target:  5'- gCUgcgCgGCGCCCGGCGuCCUCCUcCCGUGg -3'
miRNA:   3'- -GGa--GgCGCGGGUCGC-GGAGGA-GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.