miRNA display CGI


Results 1 - 20 of 534 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 3' -64.7 NC_004812.1 + 157 0.69 0.37906
Target:  5'- gCCgCCGCGCCC-GCGgC-CCgCCGCGc -3'
miRNA:   3'- -GGaGGCGCGGGuCGCgGaGGaGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 421 0.73 0.205539
Target:  5'- cCUUCCGCGCgCGGCGCuCUCgCgcgcgcccgCCGCGa -3'
miRNA:   3'- -GGAGGCGCGgGUCGCG-GAG-Ga--------GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 461 0.68 0.42706
Target:  5'- cCCg-CGCGUCCcGCGCCccgCgUCCGCGc -3'
miRNA:   3'- -GGagGCGCGGGuCGCGGa--GgAGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 553 0.69 0.386806
Target:  5'- gCCUcCCGC-CCCGGCGCgCgcggCCgcguggagCCGCGg -3'
miRNA:   3'- -GGA-GGCGcGGGUCGCG-Ga---GGa-------GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 592 0.66 0.570153
Target:  5'- gCCcCCG-GCCCcgGGCGuccCCUCCcCCGCGc -3'
miRNA:   3'- -GGaGGCgCGGG--UCGC---GGAGGaGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 659 0.68 0.438769
Target:  5'- aCCaacgCCGCGCCCgggcggcgcgaggggAGCGCgUCC-CCGgGu -3'
miRNA:   3'- -GGa---GGCGCGGG---------------UCGCGgAGGaGGCgC- -5'
21385 3' -64.7 NC_004812.1 + 687 0.7 0.349133
Target:  5'- gCUcCCGCgGCCCG--GCCUCCUCgGCGc -3'
miRNA:   3'- gGA-GGCG-CGGGUcgCGGAGGAGgCGC- -5'
21385 3' -64.7 NC_004812.1 + 742 0.7 0.31415
Target:  5'- cCCUCCcccgccgcgcGCGCCU--CGCCUCCcggcgCCGCGg -3'
miRNA:   3'- -GGAGG----------CGCGGGucGCGGAGGa----GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 834 0.68 0.443843
Target:  5'- -gUCCGaCGCCCGgagggccccgcGCGUgUCC-CCGCGg -3'
miRNA:   3'- ggAGGC-GCGGGU-----------CGCGgAGGaGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 910 0.69 0.371419
Target:  5'- cCCUCCcccaCGCCCucgcgcGCGCCgagCCcgCCGCGc -3'
miRNA:   3'- -GGAGGc---GCGGGu-----CGCGGa--GGa-GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 1014 0.67 0.478482
Target:  5'- gCCggggCCGCGCCCccgcgAGgGCCcggCCgcCCGCGc -3'
miRNA:   3'- -GGa---GGCGCGGG-----UCgCGGa--GGa-GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 1056 0.72 0.252303
Target:  5'- uCCUCC-UGCCCGGCcgcgGUCUCCUCCuGCc -3'
miRNA:   3'- -GGAGGcGCGGGUCG----CGGAGGAGG-CGc -5'
21385 3' -64.7 NC_004812.1 + 1098 0.66 0.532766
Target:  5'- uCCUCC-UGCCCGGCGgCCcgggUCgCUUCGCc -3'
miRNA:   3'- -GGAGGcGCGGGUCGC-GG----AG-GAGGCGc -5'
21385 3' -64.7 NC_004812.1 + 1237 0.71 0.284366
Target:  5'- uCCUCCcCGCCCgggcGGCGCCgcggccgcccguuggUCCgccggCCGCGg -3'
miRNA:   3'- -GGAGGcGCGGG----UCGCGG---------------AGGa----GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 1326 0.7 0.31415
Target:  5'- cCCgCCGCGCCCcGCcCCUCCccgguuuggcgUCCGCc -3'
miRNA:   3'- -GGaGGCGCGGGuCGcGGAGG-----------AGGCGc -5'
21385 3' -64.7 NC_004812.1 + 1394 0.69 0.402607
Target:  5'- gCC-CCGCGCC--GCGCCcCCUCuCGCc -3'
miRNA:   3'- -GGaGGCGCGGguCGCGGaGGAG-GCGc -5'
21385 3' -64.7 NC_004812.1 + 1599 0.66 0.570153
Target:  5'- gCUCCcCGCCUccgGGCGCC-CCg-CGCGa -3'
miRNA:   3'- gGAGGcGCGGG---UCGCGGaGGagGCGC- -5'
21385 3' -64.7 NC_004812.1 + 1663 0.68 0.460991
Target:  5'- cCC-CCGUugGCCgCGGCGCCgcggCCcgcCCGCGg -3'
miRNA:   3'- -GGaGGCG--CGG-GUCGCGGa---GGa--GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 1724 0.78 0.102596
Target:  5'- aCUCCGCccgGCCCcGCGCg-CCUCCGCGg -3'
miRNA:   3'- gGAGGCG---CGGGuCGCGgaGGAGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 1753 0.68 0.452373
Target:  5'- cCCgagcCCGCGCCCccucGCaGCCgcgCC-CCGCGc -3'
miRNA:   3'- -GGa---GGCGCGGGu---CG-CGGa--GGaGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.