miRNA display CGI


Results 1 - 20 of 534 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 3' -64.7 NC_004812.1 + 135438 1.1 0.000524
Target:  5'- cCCUCCGCGCCCAGCGCCUCCUCCGCGa -3'
miRNA:   3'- -GGAGGCGCGGGUCGCGGAGGAGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 119972 0.82 0.052232
Target:  5'- gCCUgggCgGCGCCCGGCGcCCUCCUcCCGCGg -3'
miRNA:   3'- -GGA---GgCGCGGGUCGC-GGAGGA-GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 150873 0.82 0.052232
Target:  5'- gCCUgggCgGCGCCCGGCGcCCUCCUcCCGCGg -3'
miRNA:   3'- -GGA---GgCGCGGGUCGC-GGAGGA-GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 86501 0.8 0.078104
Target:  5'- gCCa-CGCGCCCGGCGCCUCC-CUGCu -3'
miRNA:   3'- -GGagGCGCGGGUCGCGGAGGaGGCGc -5'
21385 3' -64.7 NC_004812.1 + 4023 0.79 0.083332
Target:  5'- uCCUCCGCGUCCucucGCGCCgcccgccgcuccgCCUCCGCc -3'
miRNA:   3'- -GGAGGCGCGGGu---CGCGGa------------GGAGGCGc -5'
21385 3' -64.7 NC_004812.1 + 26162 0.79 0.084166
Target:  5'- gCCggCCGCcCuCCAGCGCCgCCUCCGCGg -3'
miRNA:   3'- -GGa-GGCGcG-GGUCGCGGaGGAGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 19995 0.78 0.092949
Target:  5'- aCCUcCCGCGaCCCGGCGUCgucaUCCUUCGCGc -3'
miRNA:   3'- -GGA-GGCGC-GGGUCGCGG----AGGAGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 18295 0.78 0.092949
Target:  5'- uCCUCCGCGCC-GGCGCCacccUCCgagcccgCCGCGa -3'
miRNA:   3'- -GGAGGCGCGGgUCGCGG----AGGa------GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 18134 0.78 0.09766
Target:  5'- gCUCCGCGUCCAGCaggGCC-CCgCCGCGa -3'
miRNA:   3'- gGAGGCGCGGGUCG---CGGaGGaGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 152717 0.78 0.1001
Target:  5'- gCCgCCGCGCCC-GCGCCUCUggCUGCGc -3'
miRNA:   3'- -GGaGGCGCGGGuCGCGGAGGa-GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 27209 0.78 0.1001
Target:  5'- gCCgCCGCGCCC-GCGCCUCUggCUGCGc -3'
miRNA:   3'- -GGaGGCGCGGGuCGCGGAGGa-GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 55713 0.78 0.101091
Target:  5'- gUCUCCGCGCCCcgccucgggggccgcGGCGcCCUCCcCCGCc -3'
miRNA:   3'- -GGAGGCGCGGG---------------UCGC-GGAGGaGGCGc -5'
21385 3' -64.7 NC_004812.1 + 127232 0.78 0.102596
Target:  5'- aCUCCGCccgGCCCcGCGCg-CCUCCGCGg -3'
miRNA:   3'- gGAGGCG---CGGGuCGCGgaGGAGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 1724 0.78 0.102596
Target:  5'- aCUCCGCccgGCCCcGCGCg-CCUCCGCGg -3'
miRNA:   3'- gGAGGCG---CGGGuCGCGgaGGAGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 50034 0.78 0.105152
Target:  5'- gCCgUCUGCGCCCggcccgGGCGCCUCCUCCcucagcuccccgGCGu -3'
miRNA:   3'- -GG-AGGCGCGGG------UCGCGGAGGAGG------------CGC- -5'
21385 3' -64.7 NC_004812.1 + 151105 0.78 0.105152
Target:  5'- gCUgcgCgGCGCCCGGCGuCCUCCUcCCGUGg -3'
miRNA:   3'- -GGa--GgCGCGGGUCGC-GGAGGA-GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 90055 0.78 0.105152
Target:  5'- cCCUCCGCcgacuggaGCCCAGCGCCUgCgagCGCGa -3'
miRNA:   3'- -GGAGGCG--------CGGGUCGCGGAgGag-GCGC- -5'
21385 3' -64.7 NC_004812.1 + 120204 0.78 0.105152
Target:  5'- gCUgcgCgGCGCCCGGCGuCCUCCUcCCGUGg -3'
miRNA:   3'- -GGa--GgCGCGGGUCGC-GGAGGA-GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 77002 0.78 0.105152
Target:  5'- gCCUCgGCGCgCGcgcGCGCCUCCUCCaGCa -3'
miRNA:   3'- -GGAGgCGCGgGU---CGCGGAGGAGG-CGc -5'
21385 3' -64.7 NC_004812.1 + 126079 0.78 0.107767
Target:  5'- cCCUgCGCcugcccCCCGGCGCCUUCUUCGCGa -3'
miRNA:   3'- -GGAgGCGc-----GGGUCGCGGAGGAGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.