Results 21 - 40 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 29643 | 0.69 | 0.640228 |
Target: 5'- gGACGCCGGCGUcGcCGCcgUGCccGGCCCu -3' miRNA: 3'- -CUGUGGUUGCA-CaGCG--ACGu-CCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 138045 | 0.7 | 0.619827 |
Target: 5'- cGGCGgCGGCGg--CGgaGCGGGCCCGc -3' miRNA: 3'- -CUGUgGUUGCacaGCgaCGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 129406 | 0.73 | 0.462354 |
Target: 5'- gGACGCUGACGccgcGUCGCUGCggcGGGCCg- -3' miRNA: 3'- -CUGUGGUUGCa---CAGCGACG---UCCGGgu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 116396 | 0.76 | 0.313874 |
Target: 5'- aGGCGCgGGCG-GUCGCcgauccgcUGCGGGCCCGc -3' miRNA: 3'- -CUGUGgUUGCaCAGCG--------ACGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 4914 | 0.68 | 0.730747 |
Target: 5'- cGCGCCGcCGc-UCGCUGC-GGCCCGc -3' miRNA: 3'- cUGUGGUuGCacAGCGACGuCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 54418 | 0.69 | 0.690976 |
Target: 5'- aGACGCCGccGgGUGUcgaugggccCGCcGCGGGCCCc -3' miRNA: 3'- -CUGUGGU--UgCACA---------GCGaCGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 2792 | 0.7 | 0.609636 |
Target: 5'- cGGCGCagggcagguaGACGUGgcggCGCgcgacgGCGGGCCCGu -3' miRNA: 3'- -CUGUGg---------UUGCACa---GCGa-----CGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 3407 | 0.77 | 0.27958 |
Target: 5'- gGGCGCCGGCGUGUgGCU--GGGCCCc -3' miRNA: 3'- -CUGUGGUUGCACAgCGAcgUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 27678 | 0.69 | 0.680889 |
Target: 5'- uGGCGCC-GCGUGcCGCcG-GGGCCCAg -3' miRNA: 3'- -CUGUGGuUGCACaGCGaCgUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 83069 | 0.81 | 0.159101 |
Target: 5'- --uGCCcGCG-GUCGCUGCGGGCCCGc -3' miRNA: 3'- cugUGGuUGCaCAGCGACGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 72829 | 0.7 | 0.619827 |
Target: 5'- -cCACCGACGggccgcugcaGUCGCUGUGGGCgCGc -3' miRNA: 3'- cuGUGGUUGCa---------CAGCGACGUCCGgGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 141542 | 0.69 | 0.650424 |
Target: 5'- gGGCGgCGACGUGUCGCcGCcaguccgccuccAGGuCCCGg -3' miRNA: 3'- -CUGUgGUUGCACAGCGaCG------------UCC-GGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 138279 | 0.71 | 0.539157 |
Target: 5'- cGCGCCGcgcccugcggGCGgugGUCGCgGCGGGCUCGg -3' miRNA: 3'- cUGUGGU----------UGCa--CAGCGaCGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 82887 | 0.72 | 0.490534 |
Target: 5'- cGACGUCAugGUGgCGCUGguGGCCg- -3' miRNA: 3'- -CUGUGGUugCACaGCGACguCCGGgu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 38531 | 0.74 | 0.391697 |
Target: 5'- aGACGCgCGGCGgccgggGUCggggcgcgaaGCUGCGGGCCCGc -3' miRNA: 3'- -CUGUG-GUUGCa-----CAG----------CGACGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 133723 | 0.75 | 0.328457 |
Target: 5'- cGCACCucGGCGUGUCGUUgGCGGGgCCAu -3' miRNA: 3'- cUGUGG--UUGCACAGCGA-CGUCCgGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 82818 | 0.68 | 0.75016 |
Target: 5'- gGGCGCCGGCGcccgccCGCUcGCGGaGCCCGc -3' miRNA: 3'- -CUGUGGUUGCaca---GCGA-CGUC-CGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 32005 | 0.68 | 0.7405 |
Target: 5'- uGC-CCGGCGgcccggGUCGCUucGCcgGGGCCCAu -3' miRNA: 3'- cUGuGGUUGCa-----CAGCGA--CG--UCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 47313 | 0.68 | 0.730747 |
Target: 5'- cGGCGCguACGUGcgggCGCgcagGUAGGCCUc -3' miRNA: 3'- -CUGUGguUGCACa---GCGa---CGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 78785 | 0.69 | 0.694997 |
Target: 5'- gGACGCCcuggcgcggggcgugGACGcgGUCGCgaggcgcaGCGGGCCCc -3' miRNA: 3'- -CUGUGG---------------UUGCa-CAGCGa-------CGUCCGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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