Results 21 - 40 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21386 | 5' | -52.3 | NC_004812.1 | + | 45304 | 0.68 | 0.93853 |
Target: 5'- aACAGGagagACUugUUCGuucgcauccaGGCGG-GCGCCg -3' miRNA: 3'- -UGUUCg---UGAugAAGC----------UCGCCaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 82661 | 0.69 | 0.916913 |
Target: 5'- gGCGacGGCuuccgGCU-CUUCGGGCGcuucGUGCGCCa -3' miRNA: 3'- -UGU--UCG-----UGAuGAAGCUCGC----CACGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 37691 | 0.71 | 0.86184 |
Target: 5'- gGCGAGCcgUGCcUCGGGgGGcGCGCCg -3' miRNA: 3'- -UGUUCGugAUGaAGCUCgCCaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 48034 | 0.73 | 0.764338 |
Target: 5'- ---cGCGCUGCc-CGAGCGGggcgcGCGCCa -3' miRNA: 3'- uguuCGUGAUGaaGCUCGCCa----CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 97438 | 0.68 | 0.956152 |
Target: 5'- cGCugcuGCAgCUGCUgagccgccggUCGAaccugGCGGUGUACCa -3' miRNA: 3'- -UGuu--CGU-GAUGA----------AGCU-----CGCCACGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 128167 | 0.68 | 0.943305 |
Target: 5'- cGCGcGGCGCUGCgUCGgcgccuGGCGGagacGCACCu -3' miRNA: 3'- -UGU-UCGUGAUGaAGC------UCGCCa---CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 96826 | 0.69 | 0.910879 |
Target: 5'- cCAAGaugcuguuCUACcUCGAGCGGUGCGa- -3' miRNA: 3'- uGUUCgu------GAUGaAGCUCGCCACGUgg -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 135913 | 0.73 | 0.724511 |
Target: 5'- uACGAGCGCUACcugcagcugcugUUCGAgGUGGgGCACUg -3' miRNA: 3'- -UGUUCGUGAUG------------AAGCU-CGCCaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 83604 | 0.68 | 0.94047 |
Target: 5'- -gGAGCugUgcgugacgcuguuugACUcgcgCGAGCGGgGCGCCg -3' miRNA: 3'- ugUUCGugA---------------UGAa---GCUCGCCaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 3577 | 0.74 | 0.693723 |
Target: 5'- gGCAGGCgGCggcgGCggCGGGCGGgcGCGCCg -3' miRNA: 3'- -UGUUCG-UGa---UGaaGCUCGCCa-CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 101016 | 0.69 | 0.910879 |
Target: 5'- cCAAGCGCUcGCUggCGAGCcuGGgGCGCUg -3' miRNA: 3'- uGUUCGUGA-UGAa-GCUCG--CCaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 12621 | 0.68 | 0.93853 |
Target: 5'- -gAAGaCGCcGCcgCGAGCGGUcgGCGCCu -3' miRNA: 3'- ugUUC-GUGaUGaaGCUCGCCA--CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 148169 | 0.7 | 0.884277 |
Target: 5'- cCGAGCGCUcCggCGGGCGGggGCGgCg -3' miRNA: 3'- uGUUCGUGAuGaaGCUCGCCa-CGUgG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 112542 | 0.7 | 0.877027 |
Target: 5'- uGCGGGCGCccgc-CGAGCGGgggggcGCGCCg -3' miRNA: 3'- -UGUUCGUGaugaaGCUCGCCa-----CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 143866 | 0.72 | 0.792943 |
Target: 5'- cGCGAGCugUucggggagGCgUUCGAGgGG-GCGCCg -3' miRNA: 3'- -UGUUCGugA--------UG-AAGCUCgCCaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 148012 | 0.72 | 0.783549 |
Target: 5'- -gAGGCGCggcCUcCGGGCGGcGCGCCa -3' miRNA: 3'- ugUUCGUGau-GAaGCUCGCCaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 103741 | 0.67 | 0.959584 |
Target: 5'- cACcGGCGCUACUUCaccuucgGGGCGGgcuacgUGUACUu -3' miRNA: 3'- -UGuUCGUGAUGAAG-------CUCGCC------ACGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 119219 | 0.68 | 0.956152 |
Target: 5'- cGCGGcCGCUGCUgcaccgCGGG-GGUGCGCUu -3' miRNA: 3'- -UGUUcGUGAUGAa-----GCUCgCCACGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 56128 | 0.68 | 0.947832 |
Target: 5'- cGCcuGCGC-GCUcCGGGCGGccGCGCCc -3' miRNA: 3'- -UGuuCGUGaUGAaGCUCGCCa-CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 98764 | 0.68 | 0.943305 |
Target: 5'- -gGAGCGCggcgGCggCGAGUGG-GcCGCCg -3' miRNA: 3'- ugUUCGUGa---UGaaGCUCGCCaC-GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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