miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 5' -53.9 NC_004812.1 + 55177 0.66 0.963691
Target:  5'- cCGGCgccCCCGGCCcCCaUGAugAACcGCg -3'
miRNA:   3'- aGCCG---GGGUUGGaGG-ACUugUUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 90136 0.66 0.963691
Target:  5'- cCGGCCaaCAGCCgcgUCCUGGACGcgGCgGCc -3'
miRNA:   3'- aGCCGGg-GUUGG---AGGACUUGU--UGaUG- -5'
21387 5' -53.9 NC_004812.1 + 98193 0.66 0.963691
Target:  5'- cCGGgucccgccgcccCCCCAGCCUCCaGGcgGCGGCcGCc -3'
miRNA:   3'- aGCC------------GGGGUUGGAGGaCU--UGUUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 150990 0.66 0.963691
Target:  5'- cCGGCCCCcgagccgccuccGGCCcCCUGGGgGACc-- -3'
miRNA:   3'- aGCCGGGG------------UUGGaGGACUUgUUGaug -5'
21387 5' -53.9 NC_004812.1 + 120089 0.66 0.963691
Target:  5'- cCGGCCCCcgagccgccuccGGCCcCCUGGGgGACc-- -3'
miRNA:   3'- aGCCGGGG------------UUGGaGGACUUgUUGaug -5'
21387 5' -53.9 NC_004812.1 + 135091 0.66 0.961606
Target:  5'- cUCGGagcccgucuucacgCCCAugCUCCUGAACcACg-- -3'
miRNA:   3'- -AGCCg-------------GGGUugGAGGACUUGuUGaug -5'
21387 5' -53.9 NC_004812.1 + 92266 0.66 0.96017
Target:  5'- cCGGCUCCAggcccgccacgGCgUCCgcgcUGAGCGACaGCg -3'
miRNA:   3'- aGCCGGGGU-----------UGgAGG----ACUUGUUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 83988 0.66 0.96017
Target:  5'- gCGGCCCgGcCCUCCUuGGGgGGCg-- -3'
miRNA:   3'- aGCCGGGgUuGGAGGA-CUUgUUGaug -5'
21387 5' -53.9 NC_004812.1 + 14216 0.66 0.96017
Target:  5'- cUCGGCCCCGcCC-CCg--GCGGCcACg -3'
miRNA:   3'- -AGCCGGGGUuGGaGGacuUGUUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 124303 0.66 0.96017
Target:  5'- aCGacGCCCCcAUCUCCcccgagGAGCAGCUcACg -3'
miRNA:   3'- aGC--CGGGGuUGGAGGa-----CUUGUUGA-UG- -5'
21387 5' -53.9 NC_004812.1 + 88447 0.66 0.96017
Target:  5'- gCGGCCgCCGACCcugCCgggGAGCcACUc- -3'
miRNA:   3'- aGCCGG-GGUUGGa--GGa--CUUGuUGAug -5'
21387 5' -53.9 NC_004812.1 + 42515 0.66 0.96017
Target:  5'- cUCGGCgCCGuug-CC-GAGCAGCUGCu -3'
miRNA:   3'- -AGCCGgGGUuggaGGaCUUGUUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 97655 0.66 0.96017
Target:  5'- cUCGGcCCCCAGCCUCac-GGCAGgCcagGCg -3'
miRNA:   3'- -AGCC-GGGGUUGGAGgacUUGUU-Ga--UG- -5'
21387 5' -53.9 NC_004812.1 + 120155 0.66 0.95642
Target:  5'- -gGGCCCCccCgCUCCUcGACAACgcgGCc -3'
miRNA:   3'- agCCGGGGuuG-GAGGAcUUGUUGa--UG- -5'
21387 5' -53.9 NC_004812.1 + 113617 0.66 0.95642
Target:  5'- gCGGUCCUGGagaaCCUGAGCAcccgGCUGCg -3'
miRNA:   3'- aGCCGGGGUUgga-GGACUUGU----UGAUG- -5'
21387 5' -53.9 NC_004812.1 + 134717 0.66 0.95642
Target:  5'- cUCGGCCUCAGCgaCCcGAcACGAUUGa -3'
miRNA:   3'- -AGCCGGGGUUGgaGGaCU-UGUUGAUg -5'
21387 5' -53.9 NC_004812.1 + 84617 0.66 0.95642
Target:  5'- aCGGCCCU-AUCUCCUcGAcccugGCGACgccGCg -3'
miRNA:   3'- aGCCGGGGuUGGAGGA-CU-----UGUUGa--UG- -5'
21387 5' -53.9 NC_004812.1 + 105218 0.66 0.95642
Target:  5'- -gGGCCCCGGgCUCUUcGAAgGACa-- -3'
miRNA:   3'- agCCGGGGUUgGAGGA-CUUgUUGaug -5'
21387 5' -53.9 NC_004812.1 + 130203 0.66 0.95642
Target:  5'- gCGcGCCCCAgaGCC-CC-GGGCGGCUGu -3'
miRNA:   3'- aGC-CGGGGU--UGGaGGaCUUGUUGAUg -5'
21387 5' -53.9 NC_004812.1 + 84097 0.66 0.95642
Target:  5'- cCGGCCCgGACC-CCg--GCGGCgGCg -3'
miRNA:   3'- aGCCGGGgUUGGaGGacuUGUUGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.