miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 5' -53.9 NC_004812.1 + 155317 0.68 0.905633
Target:  5'- gUCGGCgCCCcGCCUCCggGGACc-CUGg -3'
miRNA:   3'- -AGCCG-GGGuUGGAGGa-CUUGuuGAUg -5'
21387 5' -53.9 NC_004812.1 + 155183 0.7 0.813733
Target:  5'- gCGGCCCCGGCC-CCUccccGCGGCcGCc -3'
miRNA:   3'- aGCCGGGGUUGGaGGAcu--UGUUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 154804 0.74 0.625194
Target:  5'- gCGGCCCCGACgUCCgccau-GCUGCg -3'
miRNA:   3'- aGCCGGGGUUGgAGGacuuguUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 153598 0.66 0.952436
Target:  5'- gCGGgCCCGACaCggccgCCUGGgccgGCAACUGg -3'
miRNA:   3'- aGCCgGGGUUG-Ga----GGACU----UGUUGAUg -5'
21387 5' -53.9 NC_004812.1 + 153163 0.66 0.948215
Target:  5'- cCGGgCCCGACCcCCgcGGCGGCUGg -3'
miRNA:   3'- aGCCgGGGUUGGaGGacUUGUUGAUg -5'
21387 5' -53.9 NC_004812.1 + 153017 0.68 0.911818
Target:  5'- -gGGCCUgGGCCagggCCUGGGCGAggACg -3'
miRNA:   3'- agCCGGGgUUGGa---GGACUUGUUgaUG- -5'
21387 5' -53.9 NC_004812.1 + 152659 0.67 0.934096
Target:  5'- -gGGCgCCgGGCCUCCgggaggcggGGGCAGCgaggGCg -3'
miRNA:   3'- agCCG-GGgUUGGAGGa--------CUUGUUGa---UG- -5'
21387 5' -53.9 NC_004812.1 + 150990 0.66 0.963691
Target:  5'- cCGGCCCCcgagccgccuccGGCCcCCUGGGgGACc-- -3'
miRNA:   3'- aGCCGGGG------------UUGGaGGACUUgUUGaug -5'
21387 5' -53.9 NC_004812.1 + 150084 0.68 0.899205
Target:  5'- cUCGGCCCCccGCCccccccugcUCCUGGugGugUccGCg -3'
miRNA:   3'- -AGCCGGGGu-UGG---------AGGACUugUugA--UG- -5'
21387 5' -53.9 NC_004812.1 + 147512 0.67 0.920065
Target:  5'- gUGGCCCCGaggcgccgucuucgcGCCgccgCCUGGACgGGCgGCg -3'
miRNA:   3'- aGCCGGGGU---------------UGGa---GGACUUG-UUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 143557 0.73 0.646023
Target:  5'- gCGGCCCUGGCgCgCCUGGGCGACg-- -3'
miRNA:   3'- aGCCGGGGUUG-GaGGACUUGUUGaug -5'
21387 5' -53.9 NC_004812.1 + 142278 0.72 0.71809
Target:  5'- gCGGCUCCcgGAgCUCCUGGACGAggGCc -3'
miRNA:   3'- aGCCGGGG--UUgGAGGACUUGUUgaUG- -5'
21387 5' -53.9 NC_004812.1 + 138545 0.72 0.707948
Target:  5'- aUGGCCCaCGcCCUCgUGAACGccucGCUGCu -3'
miRNA:   3'- aGCCGGG-GUuGGAGgACUUGU----UGAUG- -5'
21387 5' -53.9 NC_004812.1 + 137894 0.66 0.948215
Target:  5'- -gGcGCCCCAGCg-CCgcgGAGCuACUGCg -3'
miRNA:   3'- agC-CGGGGUUGgaGGa--CUUGuUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 137709 0.66 0.948215
Target:  5'- gCGGCCCUguacgagccGGCCUCCgcGGCGACccGCg -3'
miRNA:   3'- aGCCGGGG---------UUGGAGGacUUGUUGa-UG- -5'
21387 5' -53.9 NC_004812.1 + 137606 0.68 0.899205
Target:  5'- cCGGCCCgCGGCCgcgggCCUc--CGGCUGCu -3'
miRNA:   3'- aGCCGGG-GUUGGa----GGAcuuGUUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 137442 0.77 0.454706
Target:  5'- aCGGCCCCGaggacAUCUgCCUGGGCGACUucgGCg -3'
miRNA:   3'- aGCCGGGGU-----UGGA-GGACUUGUUGA---UG- -5'
21387 5' -53.9 NC_004812.1 + 135442 0.67 0.934096
Target:  5'- cCGcGCCCagcGCCUCCUccGCgAGCUGCg -3'
miRNA:   3'- aGC-CGGGgu-UGGAGGAcuUG-UUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 135091 0.66 0.961606
Target:  5'- cUCGGagcccgucuucacgCCCAugCUCCUGAACcACg-- -3'
miRNA:   3'- -AGCCg-------------GGGUugGAGGACUUGuUGaug -5'
21387 5' -53.9 NC_004812.1 + 134717 0.66 0.95642
Target:  5'- cUCGGCCUCAGCgaCCcGAcACGAUUGa -3'
miRNA:   3'- -AGCCGGGGUUGgaGGaCU-UGUUGAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.