miRNA display CGI


Results 1 - 20 of 975 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 3' -65.8 NC_004812.1 + 156503 0.69 0.330099
Target:  5'- aGG-GACGGGCcGgGGCGcGCgCGGGGCc -3'
miRNA:   3'- aCCgCUGCCUG-UgCCGC-CG-GCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 156455 0.77 0.099374
Target:  5'- cGGCGggccGCGGGCGCGGCGGCgCGGcGCc -3'
miRNA:   3'- aCCGC----UGCCUGUGCCGCCG-GCCcCGc -5'
21390 3' -65.8 NC_004812.1 + 156378 0.74 0.153434
Target:  5'- aGGagaGCGGGgcCGCGGgGGCCGGGGCu -3'
miRNA:   3'- aCCgc-UGCCU--GUGCCgCCGGCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 156318 0.72 0.207832
Target:  5'- gGGCGGgGGACGggaGGgGGCCGaGGGgGg -3'
miRNA:   3'- aCCGCUgCCUGUg--CCgCCGGC-CCCgC- -5'
21390 3' -65.8 NC_004812.1 + 156313 0.68 0.381196
Target:  5'- -cGCGcucuCGGGCGCGGcCGGaCGGcGGCGg -3'
miRNA:   3'- acCGCu---GCCUGUGCC-GCCgGCC-CCGC- -5'
21390 3' -65.8 NC_004812.1 + 156233 0.7 0.289836
Target:  5'- gGGCGccGCGGGaugcgccgGCGGCGGCCGagagugaGGGUGg -3'
miRNA:   3'- aCCGC--UGCCUg-------UGCCGCCGGC-------CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 156177 0.66 0.524965
Target:  5'- -cGCGGCGGGCGCGcGCGagagcGCCGcGcGCGg -3'
miRNA:   3'- acCGCUGCCUGUGC-CGC-----CGGC-CcCGC- -5'
21390 3' -65.8 NC_004812.1 + 156139 0.67 0.429001
Target:  5'- aGGCGcguGCGcACGCaGGCGcGCCGGcGGCc -3'
miRNA:   3'- aCCGC---UGCcUGUG-CCGC-CGGCC-CCGc -5'
21390 3' -65.8 NC_004812.1 + 156133 0.77 0.094619
Target:  5'- gGGUGACGGGC-CGcGCGGaCgCGGGGCGc -3'
miRNA:   3'- aCCGCUGCCUGuGC-CGCC-G-GCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 156092 0.75 0.145961
Target:  5'- gGGCGcGCGGGCccgccccggccGCGGCGGCCGugaguucGGGCa -3'
miRNA:   3'- aCCGC-UGCCUG-----------UGCCGCCGGC-------CCCGc -5'
21390 3' -65.8 NC_004812.1 + 156046 0.71 0.266173
Target:  5'- cGGCuccacGCGGcCGC-GCGcGCCGGGGCGg -3'
miRNA:   3'- aCCGc----UGCCuGUGcCGC-CGGCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 156020 0.66 0.515868
Target:  5'- aGGgGACgcccgGGGC-CGGgGGCCGcgccgcgggacGGGCGg -3'
miRNA:   3'- aCCgCUG-----CCUGuGCCgCCGGC-----------CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 155866 0.7 0.284233
Target:  5'- aGGCGagGCGcGCGCGGCGGgggaggggaGGGGCGg -3'
miRNA:   3'- aCCGC--UGCcUGUGCCGCCgg-------CCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 155818 0.85 0.027669
Target:  5'- cGGCGGCGGGgGCGGCGGCCcaucucccgcGGGGCc -3'
miRNA:   3'- aCCGCUGCCUgUGCCGCCGG----------CCCCGc -5'
21390 3' -65.8 NC_004812.1 + 155790 0.79 0.077671
Target:  5'- gGGCGuCGGACAccgcuuccCGGcCGGCCGuGGGCGg -3'
miRNA:   3'- aCCGCuGCCUGU--------GCC-GCCGGC-CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 155732 0.79 0.070327
Target:  5'- gGGUGGgGGGCGCGcGCGGgCGGGGCu -3'
miRNA:   3'- aCCGCUgCCUGUGC-CGCCgGCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 155686 0.69 0.323225
Target:  5'- cGcCGGCGGGCuCGGCGcGCgCGaGGGCGu -3'
miRNA:   3'- aCcGCUGCCUGuGCCGC-CG-GC-CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 155569 0.74 0.168633
Target:  5'- gGGgGAgGGGCGCgcgcgGGCGGCCGGGcccucGCGg -3'
miRNA:   3'- aCCgCUgCCUGUG-----CCGCCGGCCC-----CGC- -5'
21390 3' -65.8 NC_004812.1 + 155418 0.72 0.212644
Target:  5'- gGGCG-UGGugGCGGCGGCgaCGGcgacGGCGa -3'
miRNA:   3'- aCCGCuGCCugUGCCGCCG--GCC----CCGC- -5'
21390 3' -65.8 NC_004812.1 + 155350 0.76 0.123691
Target:  5'- cGGcCGGCGGACcaACgGGCGGCCGcGGCGc -3'
miRNA:   3'- aCC-GCUGCCUG--UG-CCGCCGGCcCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.