miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 105204 0.66 0.66193
Target:  5'- cGGGuGGUGggcgagcgcgccggcGGCCgGCGCCUCccacugcuGGGCGu -3'
miRNA:   3'- -CCC-CCAC---------------UCGGaCGCGGAGcu------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 114757 0.66 0.667766
Target:  5'- cGGGG-GAGg-UGCGCUguaCGAGGGCGa -3'
miRNA:   3'- cCCCCaCUCggACGCGGa--GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 30386 0.66 0.654137
Target:  5'- aGGGGcgGGGCCgGCGCCcgggcugccgcgcCGAGGAgGc -3'
miRNA:   3'- cCCCCa-CUCGGaCGCGGa------------GCUCCUgC- -5'
21392 5' -61.7 NC_004812.1 + 103981 0.66 0.687141
Target:  5'- gGGGGGcUGcGGCauaauCUGCGCCUggcUGAGG-CGg -3'
miRNA:   3'- -CCCCC-AC-UCG-----GACGCGGA---GCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 33187 0.66 0.658035
Target:  5'- cGGGGGUcucggGGGUCUcggGgGUCUCcgcgGAGGACGg -3'
miRNA:   3'- -CCCCCA-----CUCGGA---CgCGGAG----CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 107850 0.66 0.70635
Target:  5'- cGGaGGcGGGgCUcCGCCUcCGAGGGCGg -3'
miRNA:   3'- cCC-CCaCUCgGAcGCGGA-GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 23939 0.66 0.710167
Target:  5'- gGGGagcacaucuagacgaGGUG-GCCaGCGaCCcCGAGGACGu -3'
miRNA:   3'- -CCC---------------CCACuCGGaCGC-GGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 121917 0.66 0.70635
Target:  5'- cGGGccugaGGUcGGGCCUgaGCGCCgggGGGGACu -3'
miRNA:   3'- -CCC-----CCA-CUCGGA--CGCGGag-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 81588 0.66 0.70635
Target:  5'- aGGGGGUcGGCUcGgGCgaCGAGGuCGg -3'
miRNA:   3'- -CCCCCAcUCGGaCgCGgaGCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 59625 0.66 0.687141
Target:  5'- cGGGGGUGgcGGCCccGCaGCCgcaUGAGGGUGg -3'
miRNA:   3'- -CCCCCAC--UCGGa-CG-CGGa--GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 141728 0.66 0.658035
Target:  5'- cGGGGUGGGgugcaCCUGCacccaGCCgUCGucGGGCGg -3'
miRNA:   3'- cCCCCACUC-----GGACG-----CGG-AGCu-CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 29892 0.66 0.677471
Target:  5'- cGGGGGccGGGCC-GgGCCgggCGuGGugGc -3'
miRNA:   3'- -CCCCCa-CUCGGaCgCGGa--GCuCCugC- -5'
21392 5' -61.7 NC_004812.1 + 138681 0.66 0.667766
Target:  5'- aGGGGuGUGGGUUcGCGUaccccUUCGAGGAgCGa -3'
miRNA:   3'- -CCCC-CACUCGGaCGCG-----GAGCUCCU-GC- -5'
21392 5' -61.7 NC_004812.1 + 79754 0.66 0.667766
Target:  5'- gGGGGGUGGacguGCCUGCccgacGCCgCGcAGGcCGc -3'
miRNA:   3'- -CCCCCACU----CGGACG-----CGGaGC-UCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 136473 0.66 0.658035
Target:  5'- cGGGGGcgccaUGGGCgacgcGgGCCUCGucuGGGCGg -3'
miRNA:   3'- -CCCCC-----ACUCGga---CgCGGAGCu--CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 134686 0.66 0.658035
Target:  5'- aGGGGGgcgGAGCCgccgaGcCGCCggcugcgCGAaccgGGACGu -3'
miRNA:   3'- -CCCCCa--CUCGGa----C-GCGGa------GCU----CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 153319 0.66 0.667766
Target:  5'- cGGGuggacgcgcGGUGGGCCcggGCGgcgucuCCUCGGGcGGCGg -3'
miRNA:   3'- -CCC---------CCACUCGGa--CGC------GGAGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 13410 0.66 0.674563
Target:  5'- cGGGGGUGAcggccggaggggugGCC-GuCGUUUCGgGGGACGc -3'
miRNA:   3'- -CCCCCACU--------------CGGaC-GCGGAGC-UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 38624 0.66 0.677471
Target:  5'- cGGGGGUcu-CC-GCGCCgggCGAGGcCGg -3'
miRNA:   3'- -CCCCCAcucGGaCGCGGa--GCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 152818 0.66 0.706351
Target:  5'- cGGGccugaGGUcGGGCCUgaGCGCCgggGGGGACu -3'
miRNA:   3'- -CCC-----CCA-CUCGGA--CGCGGag-CUCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.