miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 145778 0.71 0.407846
Target:  5'- gGGGGGUGccggaagcagcGCgaGCGCCUCGGgcucgguguGGGCGg -3'
miRNA:   3'- -CCCCCACu----------CGgaCGCGGAGCU---------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 142377 0.67 0.648285
Target:  5'- cGGGGUGGGaCCU-CGCaC-CGGGGAUa -3'
miRNA:   3'- cCCCCACUC-GGAcGCG-GaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 142362 0.66 0.654137
Target:  5'- uGGGaGGUGAucGCCgacaucacccggcGCGCCguggccgcCGGGGGCGg -3'
miRNA:   3'- -CCC-CCACU--CGGa------------CGCGGa-------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 141810 0.71 0.399661
Target:  5'- cGGGGGUGccgcucGGCCaugGCGCgggucggCGGGGACGc -3'
miRNA:   3'- -CCCCCAC------UCGGa--CGCGga-----GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 141728 0.66 0.658035
Target:  5'- cGGGGUGGGgugcaCCUGCacccaGCCgUCGucGGGCGg -3'
miRNA:   3'- cCCCCACUC-----GGACG-----CGG-AGCu-CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 140882 0.68 0.580094
Target:  5'- cGGGGGUGGGUg-GCGggaCgcgCGGGGGCa -3'
miRNA:   3'- -CCCCCACUCGgaCGCg--Ga--GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 138681 0.66 0.667766
Target:  5'- aGGGGuGUGGGUUcGCGUaccccUUCGAGGAgCGa -3'
miRNA:   3'- -CCCC-CACUCGGaCGCG-----GAGCUCCU-GC- -5'
21392 5' -61.7 NC_004812.1 + 138426 0.66 0.67747
Target:  5'- cGGGGGgcuGCCgGCGCCccaUCGcccucAGGugGu -3'
miRNA:   3'- -CCCCCacuCGGaCGCGG---AGC-----UCCugC- -5'
21392 5' -61.7 NC_004812.1 + 138001 0.67 0.609239
Target:  5'- gGGGGGgggGAGCggggGCGCCcCGuauacaaaagggGGGGCGa -3'
miRNA:   3'- -CCCCCa--CUCGga--CGCGGaGC------------UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 136473 0.66 0.658035
Target:  5'- cGGGGGcgccaUGGGCgacgcGgGCCUCGucuGGGCGg -3'
miRNA:   3'- -CCCCC-----ACUCGga---CgCGGAGCu--CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 135689 0.66 0.667766
Target:  5'- aGGGGGUGGuUgUGUGCCgUGGGGAa- -3'
miRNA:   3'- -CCCCCACUcGgACGCGGaGCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 135116 0.74 0.277422
Target:  5'- aGGGGGUGGGCCUggggugggGUGUUUgggGAGGACGa -3'
miRNA:   3'- -CCCCCACUCGGA--------CGCGGAg--CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 134846 0.66 0.67747
Target:  5'- gGGGGGUGGcGaCCgacgGCGCgUCGGcGGCa -3'
miRNA:   3'- -CCCCCACU-C-GGa---CGCGgAGCUcCUGc -5'
21392 5' -61.7 NC_004812.1 + 134686 0.66 0.658035
Target:  5'- aGGGGGgcgGAGCCgccgaGcCGCCggcugcgCGAaccgGGACGu -3'
miRNA:   3'- -CCCCCa--CUCGGa----C-GCGGa------GCU----CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 131730 0.98 0.006202
Target:  5'- aGGGGGU-AGCCUGCGCCUCGAGGACGc -3'
miRNA:   3'- -CCCCCAcUCGGACGCGGAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 129017 0.67 0.5995
Target:  5'- cGGGcccgGGGCCgGCgGCCcCGGGGGCGg -3'
miRNA:   3'- cCCCca--CUCGGaCG-CGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 126940 0.71 0.39966
Target:  5'- cGGGGagGGGCCgGgGCCgCGAGGGCc -3'
miRNA:   3'- cCCCCa-CUCGGaCgCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 124917 0.72 0.345397
Target:  5'- --cGGa-GGCCUGCGCCggCGAGGACGa -3'
miRNA:   3'- cccCCacUCGGACGCGGa-GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 124342 0.66 0.687141
Target:  5'- cGGGGGggGAcGCC-GCGgaCCggGAGGACGu -3'
miRNA:   3'- -CCCCCa-CU-CGGaCGC--GGagCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 123505 0.69 0.504254
Target:  5'- cGGGGGUcugGGGUCggGCGCCgggagcgcggCGGGGAgGa -3'
miRNA:   3'- -CCCCCA---CUCGGa-CGCGGa---------GCUCCUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.