miRNA display CGI


Results 1 - 20 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21393 5' -60.9 NC_004812.1 + 98497 0.66 0.697352
Target:  5'- gUgGGGCGGcGCgGG-GCGCCGgguccCGGGCg -3'
miRNA:   3'- gAgCCCGCU-CGaCCaCGUGGC-----GCUCG- -5'
21393 5' -60.9 NC_004812.1 + 87909 0.66 0.677845
Target:  5'- -gCGGGCGAGgaGucgcgGCGCUGCGAc- -3'
miRNA:   3'- gaGCCCGCUCgaCca---CGUGGCGCUcg -5'
21393 5' -60.9 NC_004812.1 + 27110 0.66 0.686644
Target:  5'- cCUUGGGCGgaGGCUGcGggagGCAgaacugcCCGCGGGa -3'
miRNA:   3'- -GAGCCCGC--UCGAC-Ca---CGU-------GGCGCUCg -5'
21393 5' -60.9 NC_004812.1 + 48149 0.66 0.677845
Target:  5'- cCUCGaGGCGcGGCgccgGGcgGCgGCCGCG-GCg -3'
miRNA:   3'- -GAGC-CCGC-UCGa---CCa-CG-UGGCGCuCG- -5'
21393 5' -60.9 NC_004812.1 + 117658 0.66 0.677845
Target:  5'- -gCGGGCcGGCcGG-GCGCCGgGGGg -3'
miRNA:   3'- gaGCCCGcUCGaCCaCGUGGCgCUCg -5'
21393 5' -60.9 NC_004812.1 + 77466 0.66 0.68762
Target:  5'- gCUCGuGGCGAGCggaggcgGGgcugGgACC-CGGGCc -3'
miRNA:   3'- -GAGC-CCGCUCGa------CCa---CgUGGcGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 151995 0.66 0.68762
Target:  5'- -gUGGGCgcccGAGCUGGgcgacGCGgCGCG-GCa -3'
miRNA:   3'- gaGCCCG----CUCGACCa----CGUgGCGCuCG- -5'
21393 5' -60.9 NC_004812.1 + 100115 0.66 0.681759
Target:  5'- -gCGGGCgGGGgaGGggaggggaggcgugGCGgCGCGGGCg -3'
miRNA:   3'- gaGCCCG-CUCgaCCa-------------CGUgGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 115228 0.66 0.68762
Target:  5'- uUCGuGGCGuuggGGgUGGUGCACCaaCGAGg -3'
miRNA:   3'- gAGC-CCGC----UCgACCACGUGGc-GCUCg -5'
21393 5' -60.9 NC_004812.1 + 57688 0.66 0.677845
Target:  5'- -cCGGGCGccGGCcGcGUGCGCCGCa--- -3'
miRNA:   3'- gaGCCCGC--UCGaC-CACGUGGCGcucg -5'
21393 5' -60.9 NC_004812.1 + 74011 0.66 0.697352
Target:  5'- --aGGGgGAc--GGUGCacaugGCCGCGAGCg -3'
miRNA:   3'- gagCCCgCUcgaCCACG-----UGGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 112736 0.66 0.698323
Target:  5'- -cCGGGCGcgaaccgcgcGGCggcgccgccgcgcccGGacucgGCGCCGCGAGCc -3'
miRNA:   3'- gaGCCCGC----------UCGa--------------CCa----CGUGGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 6787 0.66 0.707034
Target:  5'- -gCGGGCGAGCcgugccucgGGggGCGCgC-CGGGCg -3'
miRNA:   3'- gaGCCCGCUCGa--------CCa-CGUG-GcGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 128535 0.66 0.697352
Target:  5'- gUCGGGCccgcagaGGC-GGUugcccaGCGCgGCGAGCa -3'
miRNA:   3'- gAGCCCGc------UCGaCCA------CGUGgCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 76073 0.66 0.677845
Target:  5'- -cCGGcGCGGGCgucccGguCCGCGAGCu -3'
miRNA:   3'- gaGCC-CGCUCGacca-CguGGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 71216 0.66 0.697352
Target:  5'- --gGcGGCGAGC-GG-GCgGCCGCGAGg -3'
miRNA:   3'- gagC-CCGCUCGaCCaCG-UGGCGCUCg -5'
21393 5' -60.9 NC_004812.1 + 128263 0.66 0.677845
Target:  5'- -gCGGGCcAGC-GGacgucgcacUGCGCgGCGGGCa -3'
miRNA:   3'- gaGCCCGcUCGaCC---------ACGUGgCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 71756 0.66 0.677845
Target:  5'- gUCGGGuUGGGCcGGU-CGCUGCGAcagGCg -3'
miRNA:   3'- gAGCCC-GCUCGaCCAcGUGGCGCU---CG- -5'
21393 5' -60.9 NC_004812.1 + 108288 0.66 0.68762
Target:  5'- -gCGGGCGGGgUcGG-GCACCacgccCGAGCc -3'
miRNA:   3'- gaGCCCGCUCgA-CCaCGUGGc----GCUCG- -5'
21393 5' -60.9 NC_004812.1 + 123827 0.66 0.68762
Target:  5'- -gCGGGCgGGGCccGG-GCGCC-CGGGCc -3'
miRNA:   3'- gaGCCCG-CUCGa-CCaCGUGGcGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.