Results 1 - 20 of 347 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21393 | 5' | -60.9 | NC_004812.1 | + | 122064 | 0.73 | 0.342701 |
Target: 5'- aCUUGGGCGccgggccugGGCUGGgccugaGCGCCG-GGGCg -3' miRNA: 3'- -GAGCCCGC---------UCGACCa-----CGUGGCgCUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 54786 | 0.74 | 0.29372 |
Target: 5'- --gGGGCG-GCUGGUcggGCcccccgGCCGCGAGCc -3' miRNA: 3'- gagCCCGCuCGACCA---CG------UGGCGCUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 122198 | 0.74 | 0.30037 |
Target: 5'- -gUGGGCGGGCUGucuggGCGCCGCcccggGGGCg -3' miRNA: 3'- gaGCCCGCUCGACca---CGUGGCG-----CUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 73765 | 0.73 | 0.307135 |
Target: 5'- -gCGGGgGcGCcgGGUGC-CCGCGGGCu -3' miRNA: 3'- gaGCCCgCuCGa-CCACGuGGCGCUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 98386 | 0.73 | 0.321014 |
Target: 5'- cCUCGGGCGGcgcggcggccGCgGGgcgGCGCCGC-AGCg -3' miRNA: 3'- -GAGCCCGCU----------CGaCCa--CGUGGCGcUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 128014 | 0.73 | 0.328127 |
Target: 5'- -gCGGGCGAGUcGGcgGCgcgGCCGuCGAGCg -3' miRNA: 3'- gaGCCCGCUCGaCCa-CG---UGGC-GCUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 150824 | 0.73 | 0.335356 |
Target: 5'- --gGGGuCGAGgaGGaaCGCCGCGAGCg -3' miRNA: 3'- gagCCC-GCUCgaCCacGUGGCGCUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 121950 | 0.73 | 0.335356 |
Target: 5'- aCUUGGGCGgcgGGCUGG-GCcugaGCgGCGGGCc -3' miRNA: 3'- -GAGCCCGC---UCGACCaCG----UGgCGCUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 41566 | 0.73 | 0.342701 |
Target: 5'- -gCGGGCuGAGCgacGUGCAgcCCGUGGGCg -3' miRNA: 3'- gaGCCCG-CUCGac-CACGU--GGCGCUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 122451 | 0.74 | 0.274463 |
Target: 5'- cCUCGGGCG-GCgGGggcgcggGCGCCccugGCGGGCg -3' miRNA: 3'- -GAGCCCGCuCGaCCa------CGUGG----CGCUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 78464 | 0.75 | 0.239 |
Target: 5'- -gCGGGCGAuGCcGGccucgUGCGCCGCGAGg -3' miRNA: 3'- gaGCCCGCU-CGaCC-----ACGUGGCGCUCg -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 128605 | 0.76 | 0.228059 |
Target: 5'- -gCGGGCgGGGCgGGggagGCGCCGcCGAGCu -3' miRNA: 3'- gaGCCCG-CUCGaCCa---CGUGGC-GCUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 51183 | 0.79 | 0.140436 |
Target: 5'- aCUCGGGCGGGCgcGG-GCGCCGggccccgcCGAGCg -3' miRNA: 3'- -GAGCCCGCUCGa-CCaCGUGGC--------GCUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 128767 | 0.78 | 0.151273 |
Target: 5'- gCUCGGGCGGGCcGcagcGCGCgGCGAGCg -3' miRNA: 3'- -GAGCCCGCUCGaCca--CGUGgCGCUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 71901 | 0.77 | 0.188468 |
Target: 5'- -gCGGGcCGGGC-GGcgcgGCGCCGCGGGCg -3' miRNA: 3'- gaGCCC-GCUCGaCCa---CGUGGCGCUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 5800 | 0.77 | 0.19776 |
Target: 5'- cCUCGGGCugcgGGGCUGcGggGCGCgGCGGGCu -3' miRNA: 3'- -GAGCCCG----CUCGAC-Ca-CGUGgCGCUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 74057 | 0.76 | 0.207449 |
Target: 5'- cCUCGGGCGgcAGCggcGG-GCGCgCGCGGGCc -3' miRNA: 3'- -GAGCCCGC--UCGa--CCaCGUG-GCGCUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 39562 | 0.76 | 0.212446 |
Target: 5'- -gCGGGCGAugagcgGCUGGUGCACCuCGAacuGCa -3' miRNA: 3'- gaGCCCGCU------CGACCACGUGGcGCU---CG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 30774 | 0.76 | 0.217031 |
Target: 5'- -gCGGGCGAGCcGGccccgccUGCgggGCCGCGGGCc -3' miRNA: 3'- gaGCCCGCUCGaCC-------ACG---UGGCGCUCG- -5' |
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21393 | 5' | -60.9 | NC_004812.1 | + | 78415 | 0.76 | 0.228059 |
Target: 5'- --aGGGCGAGCggagggcguugaUGGUcaGCCGCGAGCa -3' miRNA: 3'- gagCCCGCUCG------------ACCAcgUGGCGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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