miRNA display CGI


Results 1 - 20 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21393 5' -60.9 NC_004812.1 + 131565 1.1 0.000898
Target:  5'- aCUCGGGCGAGCUGGUGCACCGCGAGCc -3'
miRNA:   3'- -GAGCCCGCUCGACCACGUGGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 11607 0.79 0.133611
Target:  5'- -gCGGGCGGGCUcGGcGUGCCGgGAGCg -3'
miRNA:   3'- gaGCCCGCUCGA-CCaCGUGGCgCUCG- -5'
21393 5' -60.9 NC_004812.1 + 51183 0.79 0.140436
Target:  5'- aCUCGGGCGGGCgcGG-GCGCCGggccccgcCGAGCg -3'
miRNA:   3'- -GAGCCCGCUCGa-CCaCGUGGC--------GCUCG- -5'
21393 5' -60.9 NC_004812.1 + 79186 0.79 0.143967
Target:  5'- -gCGGG--AGCUGGUGCAgCGCGGGCg -3'
miRNA:   3'- gaGCCCgcUCGACCACGUgGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 3259 0.78 0.151273
Target:  5'- gCUCGGGCGGGCcGcagcGCGCgGCGAGCg -3'
miRNA:   3'- -GAGCCCGCUCGaCca--CGUGgCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 128767 0.78 0.151273
Target:  5'- gCUCGGGCGGGCcGcagcGCGCgGCGAGCg -3'
miRNA:   3'- -GAGCCCGCUCGaCca--CGUGgCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 71901 0.77 0.188468
Target:  5'- -gCGGGcCGGGC-GGcgcgGCGCCGCGGGCg -3'
miRNA:   3'- gaGCCC-GCUCGaCCa---CGUGGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 101022 0.77 0.193065
Target:  5'- gCUCGcuGGCGAGcCUGGgGCGCUGCGuGCg -3'
miRNA:   3'- -GAGC--CCGCUC-GACCaCGUGGCGCuCG- -5'
21393 5' -60.9 NC_004812.1 + 5800 0.77 0.19776
Target:  5'- cCUCGGGCugcgGGGCUGcGggGCGCgGCGGGCu -3'
miRNA:   3'- -GAGCCCG----CUCGAC-Ca-CGUGgCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 36701 0.77 0.19776
Target:  5'- cCUCGGGCugcgGGGCUGcGggGCGCgGCGGGCu -3'
miRNA:   3'- -GAGCCCG----CUCGAC-Ca-CGUGgCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 60091 0.76 0.202554
Target:  5'- -gCGGGCGAGCcccgGGUGC-CCG-GGGCa -3'
miRNA:   3'- gaGCCCGCUCGa---CCACGuGGCgCUCG- -5'
21393 5' -60.9 NC_004812.1 + 74057 0.76 0.207449
Target:  5'- cCUCGGGCGgcAGCggcGG-GCGCgCGCGGGCc -3'
miRNA:   3'- -GAGCCCGC--UCGa--CCaCGUG-GCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 39562 0.76 0.212446
Target:  5'- -gCGGGCGAugagcgGCUGGUGCACCuCGAacuGCa -3'
miRNA:   3'- gaGCCCGCU------CGACCACGUGGcGCU---CG- -5'
21393 5' -60.9 NC_004812.1 + 30774 0.76 0.217031
Target:  5'- -gCGGGCGAGCcGGccccgccUGCgggGCCGCGGGCc -3'
miRNA:   3'- gaGCCCGCUCGaCC-------ACG---UGGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 128605 0.76 0.228059
Target:  5'- -gCGGGCgGGGCgGGggagGCGCCGcCGAGCu -3'
miRNA:   3'- gaGCCCG-CUCGaCCa---CGUGGC-GCUCG- -5'
21393 5' -60.9 NC_004812.1 + 78415 0.76 0.228059
Target:  5'- --aGGGCGAGCggagggcguugaUGGUcaGCCGCGAGCa -3'
miRNA:   3'- gagCCCGCUCG------------ACCAcgUGGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 3096 0.76 0.228059
Target:  5'- -gCGGGCgGGGCgGGggagGCGCCGcCGAGCu -3'
miRNA:   3'- gaGCCCG-CUCGaCCa---CGUGGC-GCUCG- -5'
21393 5' -60.9 NC_004812.1 + 111720 0.75 0.239
Target:  5'- -aCGGGCGAGCUcgcguucgGGUGCgacGCCGCGcucguGCg -3'
miRNA:   3'- gaGCCCGCUCGA--------CCACG---UGGCGCu----CG- -5'
21393 5' -60.9 NC_004812.1 + 78464 0.75 0.239
Target:  5'- -gCGGGCGAuGCcGGccucgUGCGCCGCGAGg -3'
miRNA:   3'- gaGCCCGCU-CGaCC-----ACGUGGCGCUCg -5'
21393 5' -60.9 NC_004812.1 + 128832 0.75 0.256229
Target:  5'- uCUCccccGGCGGGCUGGgccgcccgccccUGCggGCCGCGGGCg -3'
miRNA:   3'- -GAGc---CCGCUCGACC------------ACG--UGGCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.