miRNA display CGI


Results 1 - 20 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21393 5' -60.9 NC_004812.1 + 90 0.69 0.521582
Target:  5'- -cCGGGCGGGCUcccgGCcCCGCGcGCg -3'
miRNA:   3'- gaGCCCGCUCGAcca-CGuGGCGCuCG- -5'
21393 5' -60.9 NC_004812.1 + 93 0.66 0.735691
Target:  5'- --aGGGaCGGGCcGGgGCGCgCGCGGGg -3'
miRNA:   3'- gagCCC-GCUCGaCCaCGUG-GCGCUCg -5'
21393 5' -60.9 NC_004812.1 + 602 0.67 0.638473
Target:  5'- -cCGGGCGucccCUcccccGCGCCGCGAGCa -3'
miRNA:   3'- gaGCCCGCuc--GAcca--CGUGGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 1247 0.71 0.411383
Target:  5'- -cCGGGCGGcgccgcggccgcccGUUGGUccGCcgGCCGCGGGCg -3'
miRNA:   3'- gaGCCCGCU--------------CGACCA--CG--UGGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 1321 0.71 0.430915
Target:  5'- -gCGGGCGGuccGCgGGcGguCCGCGGGCg -3'
miRNA:   3'- gaGCCCGCU---CGaCCaCguGGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 2199 0.69 0.550262
Target:  5'- gUCGucGGCGAGCaGcGUGuCGCCGCG-GCc -3'
miRNA:   3'- gAGC--CCGCUCGaC-CAC-GUGGCGCuCG- -5'
21393 5' -60.9 NC_004812.1 + 2506 0.73 0.328127
Target:  5'- -gCGGGCGAGUcGGcgGCgcgGCCGuCGAGCg -3'
miRNA:   3'- gaGCCCGCUCGaCCa-CG---UGGC-GCUCG- -5'
21393 5' -60.9 NC_004812.1 + 2755 0.66 0.677845
Target:  5'- -gCGGGCcAGC-GGacgucgcacUGCGCgGCGGGCa -3'
miRNA:   3'- gaGCCCGcUCGaCC---------ACGUGgCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 3026 0.66 0.697352
Target:  5'- gUCGGGCccgcagaGGC-GGUugcccaGCGCgGCGAGCa -3'
miRNA:   3'- gAGCCCGc------UCGaCCA------CGUGgCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 3096 0.76 0.228059
Target:  5'- -gCGGGCgGGGCgGGggagGCGCCGcCGAGCu -3'
miRNA:   3'- gaGCCCG-CUCGaCCa---CGUGGC-GCUCG- -5'
21393 5' -60.9 NC_004812.1 + 3259 0.78 0.151273
Target:  5'- gCUCGGGCGGGCcGcagcGCGCgGCGAGCg -3'
miRNA:   3'- -GAGCCCGCUCGaCca--CGUGgCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 3461 0.69 0.540643
Target:  5'- gUCGGGCccggcGGGC-GGUcGCGCCGUcAGCg -3'
miRNA:   3'- gAGCCCG-----CUCGaCCA-CGUGGCGcUCG- -5'
21393 5' -60.9 NC_004812.1 + 3590 0.67 0.6286
Target:  5'- --gGcGGCGGGCgGGcGCGCCgGCGAGg -3'
miRNA:   3'- gagC-CCGCUCGaCCaCGUGG-CGCUCg -5'
21393 5' -60.9 NC_004812.1 + 4526 0.66 0.726211
Target:  5'- --aGGGCGcgcuGCUGG-GCGgCCGC-AGCu -3'
miRNA:   3'- gagCCCGCu---CGACCaCGU-GGCGcUCG- -5'
21393 5' -60.9 NC_004812.1 + 4626 0.68 0.579407
Target:  5'- gCUCGGGCGcccacacgGGCgcgGGcGCGCCgGCG-GCc -3'
miRNA:   3'- -GAGCCCGC--------UCGa--CCaCGUGG-CGCuCG- -5'
21393 5' -60.9 NC_004812.1 + 4796 0.72 0.365425
Target:  5'- --gGGGCGAggGCUGGUGCgGgCGCGGGg -3'
miRNA:   3'- gagCCCGCU--CGACCACG-UgGCGCUCg -5'
21393 5' -60.9 NC_004812.1 + 4923 0.66 0.723352
Target:  5'- gCUCGcugcggcccgcggaGGCGGcGCUGGaggGCgGCCGgCGGGCg -3'
miRNA:   3'- -GAGC--------------CCGCU-CGACCa--CG-UGGC-GCUCG- -5'
21393 5' -60.9 NC_004812.1 + 4989 0.69 0.502789
Target:  5'- -gCGGG-GGGCc-GUGCGCCGCaGGGCg -3'
miRNA:   3'- gaGCCCgCUCGacCACGUGGCG-CUCG- -5'
21393 5' -60.9 NC_004812.1 + 5128 0.71 0.405548
Target:  5'- --gGGGCGGGCgcggaggcgGGaGgGCCGCGGGCc -3'
miRNA:   3'- gagCCCGCUCGa--------CCaCgUGGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 5710 0.68 0.559932
Target:  5'- -aCGGGgGGGCgggGGUcUGCCGCGGGa -3'
miRNA:   3'- gaGCCCgCUCGa--CCAcGUGGCGCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.