miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21394 5' -61.1 NC_004812.1 + 91145 0.65 0.778493
Target:  5'- cGGUCggggacgGGCGGUcCGgGGgccggggggaccccUCCCcgagGGACGCGg -3'
miRNA:   3'- -CCAG-------CCGCCA-GCgCU--------------AGGG----CCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 101953 0.66 0.727851
Target:  5'- cGGgCGGCGGgCGUcagGggCCgCGGACGCc -3'
miRNA:   3'- -CCaGCCGCCaGCG---CuaGG-GCCUGCGc -5'
21394 5' -61.1 NC_004812.1 + 7636 0.66 0.737102
Target:  5'- --gCGGCGGcCGgGGU-CgGGGCGCGa -3'
miRNA:   3'- ccaGCCGCCaGCgCUAgGgCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 20060 0.66 0.727851
Target:  5'- ---aGGCGGUCGCgGGUCCUcGGCgGCa -3'
miRNA:   3'- ccagCCGCCAGCG-CUAGGGcCUG-CGc -5'
21394 5' -61.1 NC_004812.1 + 71396 0.66 0.746272
Target:  5'- aGG-CGGgGGUCGCag---CGGGCGCGg -3'
miRNA:   3'- -CCaGCCgCCAGCGcuaggGCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 96180 0.66 0.737102
Target:  5'- cGGcgaGGUGGUCGCGccggagcggGUCCa-GACGCGc -3'
miRNA:   3'- -CCag-CCGCCAGCGC---------UAGGgcCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 121848 0.66 0.727851
Target:  5'- cGGgccgCGGCGGcCGCGGcgaCCaCGG-CGCa -3'
miRNA:   3'- -CCa---GCCGCCaGCGCUa--GG-GCCuGCGc -5'
21394 5' -61.1 NC_004812.1 + 131080 0.66 0.746272
Target:  5'- gGGUcCGGCGuUCGCGGcggCCCGucGGCGgGg -3'
miRNA:   3'- -CCA-GCCGCcAGCGCUa--GGGC--CUGCgC- -5'
21394 5' -61.1 NC_004812.1 + 72204 0.66 0.746272
Target:  5'- gGGUCGucGCGGggcgucCGCGGccUCgCGGACuGCGg -3'
miRNA:   3'- -CCAGC--CGCCa-----GCGCU--AGgGCCUG-CGC- -5'
21394 5' -61.1 NC_004812.1 + 130856 0.66 0.746272
Target:  5'- gGGUCGGCGGgggCGCGGcggcgUCgaugacccacaCCGaGuCGCGg -3'
miRNA:   3'- -CCAGCCGCCa--GCGCU-----AG-----------GGC-CuGCGC- -5'
21394 5' -61.1 NC_004812.1 + 90908 0.66 0.727851
Target:  5'- --cCGGCGGggUGagGAUCUCGGACGaCGa -3'
miRNA:   3'- ccaGCCGCCa-GCg-CUAGGGCCUGC-GC- -5'
21394 5' -61.1 NC_004812.1 + 5042 0.66 0.746272
Target:  5'- gGGgcagCGccGCGGUCaCGGgggCCCGGGCGgGa -3'
miRNA:   3'- -CCa---GC--CGCCAGcGCUa--GGGCCUGCgC- -5'
21394 5' -61.1 NC_004812.1 + 105669 0.66 0.746272
Target:  5'- gGGgacgGGCGGcCGCGGagUUCCGGGuuuuCGCGg -3'
miRNA:   3'- -CCag--CCGCCaGCGCU--AGGGCCU----GCGC- -5'
21394 5' -61.1 NC_004812.1 + 982 0.66 0.737102
Target:  5'- gGGUCcGgGGUCGCcggGGUCCUGGGgGUc -3'
miRNA:   3'- -CCAGcCgCCAGCG---CUAGGGCCUgCGc -5'
21394 5' -61.1 NC_004812.1 + 75234 0.66 0.737102
Target:  5'- cGGUCGGUGGccucggCGCGcugcugCuuGG-CGCGg -3'
miRNA:   3'- -CCAGCCGCCa-----GCGCua----GggCCuGCGC- -5'
21394 5' -61.1 NC_004812.1 + 104519 0.66 0.727851
Target:  5'- cGGgCGGUcGUCGCGcgCCCGcGaACGCc -3'
miRNA:   3'- -CCaGCCGcCAGCGCuaGGGC-C-UGCGc -5'
21394 5' -61.1 NC_004812.1 + 127856 0.66 0.727851
Target:  5'- cGGgCGGCaGGgCGuCGggCCCGGcGCGCGc -3'
miRNA:   3'- -CCaGCCG-CCaGC-GCuaGGGCC-UGCGC- -5'
21394 5' -61.1 NC_004812.1 + 131415 0.66 0.727851
Target:  5'- cGcCGGCGGgcggagccgcCGCGAcgccgcCCCGGAgCGCGg -3'
miRNA:   3'- cCaGCCGCCa---------GCGCUa-----GGGCCU-GCGC- -5'
21394 5' -61.1 NC_004812.1 + 127508 0.66 0.727851
Target:  5'- gGGUcccgcCGGCGGUCGC---UCgGGGCGCc -3'
miRNA:   3'- -CCA-----GCCGCCAGCGcuaGGgCCUGCGc -5'
21394 5' -61.1 NC_004812.1 + 141462 0.66 0.724129
Target:  5'- aGGUCGuGCGGggagcccccgagGCGAcgcggCCGGACGCGc -3'
miRNA:   3'- -CCAGC-CGCCag----------CGCUag---GGCCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.