miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21394 5' -61.1 NC_004812.1 + 130491 1.09 0.001421
Target:  5'- uGGUCGGCGGUCGCGAUCCCGGACGCGc -3'
miRNA:   3'- -CCAGCCGCCAGCGCUAGGGCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 18832 0.83 0.08793
Target:  5'- cGGgCGGCGGUUGCGcgccgCCCGGugGCGg -3'
miRNA:   3'- -CCaGCCGCCAGCGCua---GGGCCugCGC- -5'
21394 5' -61.1 NC_004812.1 + 68174 0.8 0.130667
Target:  5'- gGGUCGGCGGcCGCGGgcgggggcgCgCCGGACGCc -3'
miRNA:   3'- -CCAGCCGCCaGCGCUa--------G-GGCCUGCGc -5'
21394 5' -61.1 NC_004812.1 + 17039 0.8 0.133896
Target:  5'- gGGUCGGCGGggggCGCcucGGUCCCGGcCGCc -3'
miRNA:   3'- -CCAGCCGCCa---GCG---CUAGGGCCuGCGc -5'
21394 5' -61.1 NC_004812.1 + 26314 0.8 0.144028
Target:  5'- gGGUCGGCGGgguUCGCGGccgcucgggggUCCCGGGgGUGg -3'
miRNA:   3'- -CCAGCCGCC---AGCGCU-----------AGGGCCUgCGC- -5'
21394 5' -61.1 NC_004812.1 + 108073 0.79 0.158626
Target:  5'- aGUCGGCGGcggUGCGGUCCUGGAucgUGCGa -3'
miRNA:   3'- cCAGCCGCCa--GCGCUAGGGCCU---GCGC- -5'
21394 5' -61.1 NC_004812.1 + 101913 0.78 0.174548
Target:  5'- aGGcgCGGCGGUCGggccuCGGggcCCCGGACGCGc -3'
miRNA:   3'- -CCa-GCCGCCAGC-----GCUa--GGGCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 143617 0.78 0.178745
Target:  5'- cGG-CGGCGGcgagagCGCGAgcgcggcCCCGGGCGCGg -3'
miRNA:   3'- -CCaGCCGCCa-----GCGCUa------GGGCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 106728 0.78 0.187409
Target:  5'- gGGUCGGCGG-CGgGGcccaucgUCCGGGCGCGg -3'
miRNA:   3'- -CCAGCCGCCaGCgCUa------GGGCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 127908 0.77 0.225839
Target:  5'- cGGggCGGCGGUCGCGAaaUCCaggaaGGgcACGCGa -3'
miRNA:   3'- -CCa-GCCGCCAGCGCU--AGGg----CC--UGCGC- -5'
21394 5' -61.1 NC_004812.1 + 49744 0.77 0.225839
Target:  5'- gGGUCGG-GGUCGCGGcgggggCCCGGAaaCGCa -3'
miRNA:   3'- -CCAGCCgCCAGCGCUa-----GGGCCU--GCGc -5'
21394 5' -61.1 NC_004812.1 + 32999 0.76 0.231088
Target:  5'- cGGcCGGCGuUCGCGGgcgaCCGGGCGCGc -3'
miRNA:   3'- -CCaGCCGCcAGCGCUag--GGCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 141835 0.76 0.239699
Target:  5'- gGGUCGGCGGggaCGCGAgcgugucgucgccCCCGGAgcagcCGCGg -3'
miRNA:   3'- -CCAGCCGCCa--GCGCUa------------GGGCCU-----GCGC- -5'
21394 5' -61.1 NC_004812.1 + 139350 0.76 0.253115
Target:  5'- aGGcggaGGCGGUCGCGugggCCCGGGgGCa -3'
miRNA:   3'- -CCag--CCGCCAGCGCua--GGGCCUgCGc -5'
21394 5' -61.1 NC_004812.1 + 79041 0.76 0.258304
Target:  5'- gGGUCGGgGGcCGCGG-CCCagcggccGGACGCGu -3'
miRNA:   3'- -CCAGCCgCCaGCGCUaGGG-------CCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 72251 0.75 0.264763
Target:  5'- cGGUCGGCGGgCGCGAgaCUGGAcCGCc -3'
miRNA:   3'- -CCAGCCGCCaGCGCUagGGCCU-GCGc -5'
21394 5' -61.1 NC_004812.1 + 77590 0.75 0.270748
Target:  5'- uGGUacCGGCGGUCGCGGgcgucCCCGGccagcaGCGCc -3'
miRNA:   3'- -CCA--GCCGCCAGCGCUa----GGGCC------UGCGc -5'
21394 5' -61.1 NC_004812.1 + 116499 0.75 0.283043
Target:  5'- gGGcCGGgGGUCGCGGa--CGGACGCGc -3'
miRNA:   3'- -CCaGCCgCCAGCGCUaggGCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 18877 0.75 0.295776
Target:  5'- gGGUCGGCGGccCGCGGgucgCCgCGGAgGCc -3'
miRNA:   3'- -CCAGCCGCCa-GCGCUa---GG-GCCUgCGc -5'
21394 5' -61.1 NC_004812.1 + 59579 0.74 0.30165
Target:  5'- gGGUCggGGCGGacgaaccUCGCGG-CCCGGuCGCGg -3'
miRNA:   3'- -CCAG--CCGCC-------AGCGCUaGGGCCuGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.