miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21394 5' -61.1 NC_004812.1 + 54 0.66 0.764338
Target:  5'- gGGggGGCGcGUUuggGCGGgcUCCCGGGCGgGc -3'
miRNA:   3'- -CCagCCGC-CAG---CGCU--AGGGCCUGCgC- -5'
21394 5' -61.1 NC_004812.1 + 55 0.67 0.680647
Target:  5'- cGGgcgCGGCGG-CGCGGcgCCaCGcGCGCGc -3'
miRNA:   3'- -CCa--GCCGCCaGCGCUa-GG-GCcUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 209 0.66 0.746272
Target:  5'- gGGagGGCccgGGUCGCGcagcCCCGGccccCGCGg -3'
miRNA:   3'- -CCagCCG---CCAGCGCua--GGGCCu---GCGC- -5'
21394 5' -61.1 NC_004812.1 + 545 0.68 0.642197
Target:  5'- cGGaaGGCGGcgacgcgccgCGCGAcgcccgcccgUCCCGcGGCGCGg -3'
miRNA:   3'- -CCagCCGCCa---------GCGCU----------AGGGC-CUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 564 0.7 0.500171
Target:  5'- cGGcgCGcGCGGcCGCGuggagCCgCGGGCGCGg -3'
miRNA:   3'- -CCa-GC-CGCCaGCGCua---GG-GCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 694 0.66 0.764338
Target:  5'- cGGccCGGCcuccucGG-CGCGGcagCCCGGGCGCc -3'
miRNA:   3'- -CCa-GCCG------CCaGCGCUa--GGGCCUGCGc -5'
21394 5' -61.1 NC_004812.1 + 719 0.72 0.419221
Target:  5'- cGUCGGCGccggCGCGGUCgCCGGcgggggugggggcgGCGCGa -3'
miRNA:   3'- cCAGCCGCca--GCGCUAG-GGCC--------------UGCGC- -5'
21394 5' -61.1 NC_004812.1 + 878 0.66 0.773218
Target:  5'- gGGUCcGgGGUCGCcgggGGUCCUGGGgGUc -3'
miRNA:   3'- -CCAGcCgCCAGCG----CUAGGGCCUgCGc -5'
21394 5' -61.1 NC_004812.1 + 930 0.66 0.773218
Target:  5'- gGGUCcGgGGUCGCcgggGGUCCUGGGgGUc -3'
miRNA:   3'- -CCAGcCgCCAGCG----CUAGGGCCUgCGc -5'
21394 5' -61.1 NC_004812.1 + 982 0.66 0.737102
Target:  5'- gGGUCcGgGGUCGCcggGGUCCUGGGgGUc -3'
miRNA:   3'- -CCAGcCgCCAGCG---CUAGGGCCUgCGc -5'
21394 5' -61.1 NC_004812.1 + 1152 0.68 0.651838
Target:  5'- --cCGGCGG-CGCGAgCCCGGcccccCGCu -3'
miRNA:   3'- ccaGCCGCCaGCGCUaGGGCCu----GCGc -5'
21394 5' -61.1 NC_004812.1 + 1293 0.73 0.351131
Target:  5'- cGGUCcgagGGCGGUCcgaggGCGGUCCgCGGGCGg- -3'
miRNA:   3'- -CCAG----CCGCCAG-----CGCUAGG-GCCUGCgc -5'
21394 5' -61.1 NC_004812.1 + 1326 0.67 0.699687
Target:  5'- nGGUCcGCGG--GCGGUCCgCGGGCGg- -3'
miRNA:   3'- -CCAGcCGCCagCGCUAGG-GCCUGCgc -5'
21394 5' -61.1 NC_004812.1 + 1422 0.68 0.651838
Target:  5'- --aCGGCGGcCGCGGggaggggCCgGGGcCGCGa -3'
miRNA:   3'- ccaGCCGCCaGCGCUa------GGgCCU-GCGC- -5'
21394 5' -61.1 NC_004812.1 + 1999 0.66 0.727851
Target:  5'- gGGUcccgcCGGCGGUCGC---UCgGGGCGCc -3'
miRNA:   3'- -CCA-----GCCGCCAGCGcuaGGgCCUGCGc -5'
21394 5' -61.1 NC_004812.1 + 2043 0.7 0.537078
Target:  5'- cGGUCGGCGGcggggggCGCGGgggaggGGGCGCGc -3'
miRNA:   3'- -CCAGCCGCCa------GCGCUaggg--CCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 2348 0.66 0.727851
Target:  5'- cGGgCGGCaGGgCGuCGggCCCGGcGCGCGc -3'
miRNA:   3'- -CCaGCCG-CCaGC-GCuaGGGCC-UGCGC- -5'
21394 5' -61.1 NC_004812.1 + 2513 0.69 0.603632
Target:  5'- aGUCGGCGG-CGCGG-CCguCGaGCGCGg -3'
miRNA:   3'- cCAGCCGCCaGCGCUaGG--GCcUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 2643 0.68 0.622903
Target:  5'- cGG-CGGCGG-CGCG-UCCgGGuagagGCGCGc -3'
miRNA:   3'- -CCaGCCGCCaGCGCuAGGgCC-----UGCGC- -5'
21394 5' -61.1 NC_004812.1 + 3196 0.71 0.455701
Target:  5'- aGG-CGGCGG-CGCGGcgcagcgggCCCGaGGCGCGc -3'
miRNA:   3'- -CCaGCCGCCaGCGCUa--------GGGC-CUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.