miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21394 5' -61.1 NC_004812.1 + 148302 0.72 0.413451
Target:  5'- cGUCGGCGuacgCGCGGagcUCCCGG-CGCa -3'
miRNA:   3'- cCAGCCGCca--GCGCU---AGGGCCuGCGc -5'
21394 5' -61.1 NC_004812.1 + 117622 0.74 0.322568
Target:  5'- gGGggGGCGG-CGCGGgccgCCGGGCGCGg -3'
miRNA:   3'- -CCagCCGCCaGCGCUag--GGCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 5391 0.73 0.351131
Target:  5'- gGGagGGgGGUCGgGGUCUCccagGGACGCGg -3'
miRNA:   3'- -CCagCCgCCAGCgCUAGGG----CCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 8370 0.73 0.351131
Target:  5'- cGUCGGCGGcCGcCGGggCCCGGgguccggggGCGCGg -3'
miRNA:   3'- cCAGCCGCCaGC-GCUa-GGGCC---------UGCGC- -5'
21394 5' -61.1 NC_004812.1 + 1293 0.73 0.351131
Target:  5'- cGGUCcgagGGCGGUCcgaggGCGGUCCgCGGGCGg- -3'
miRNA:   3'- -CCAG----CCGCCAG-----CGCUAGG-GCCUGCgc -5'
21394 5' -61.1 NC_004812.1 + 85144 0.73 0.358546
Target:  5'- ---gGGCGGggGCGcgCCUGGACGCGc -3'
miRNA:   3'- ccagCCGCCagCGCuaGGGCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 97385 0.73 0.373703
Target:  5'- cGGUCGcgggcGUGGgcgCGCGggCCuCGGGCGCGu -3'
miRNA:   3'- -CCAGC-----CGCCa--GCGCuaGG-GCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 121132 0.72 0.389289
Target:  5'- gGGUCGGCGGgcccgGgGGUCCaagGGugGCGc -3'
miRNA:   3'- -CCAGCCGCCag---CgCUAGGg--CCugCGC- -5'
21394 5' -61.1 NC_004812.1 + 125170 0.72 0.389289
Target:  5'- ---gGGCGGgaggCGgGAgggCCCGGGCGCGc -3'
miRNA:   3'- ccagCCGCCa---GCgCUa--GGGCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 98632 0.74 0.315704
Target:  5'- cGUC-GCGGcCGCGcugcgCCCGGGCGCGa -3'
miRNA:   3'- cCAGcCGCCaGCGCua---GGGCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 76050 0.74 0.315704
Target:  5'- cGUCGGCGGcccagcgcUCGCGGccggcgcgggcgUCCCGGucCGCGa -3'
miRNA:   3'- cCAGCCGCC--------AGCGCU------------AGGGCCu-GCGC- -5'
21394 5' -61.1 NC_004812.1 + 18877 0.75 0.295776
Target:  5'- gGGUCGGCGGccCGCGGgucgCCgCGGAgGCc -3'
miRNA:   3'- -CCAGCCGCCa-GCGCUa---GG-GCCUgCGc -5'
21394 5' -61.1 NC_004812.1 + 26314 0.8 0.144028
Target:  5'- gGGUCGGCGGgguUCGCGGccgcucgggggUCCCGGGgGUGg -3'
miRNA:   3'- -CCAGCCGCC---AGCGCU-----------AGGGCCUgCGC- -5'
21394 5' -61.1 NC_004812.1 + 101913 0.78 0.174548
Target:  5'- aGGcgCGGCGGUCGggccuCGGggcCCCGGACGCGc -3'
miRNA:   3'- -CCa-GCCGCCAGC-----GCUa--GGGCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 49744 0.77 0.225839
Target:  5'- gGGUCGG-GGUCGCGGcgggggCCCGGAaaCGCa -3'
miRNA:   3'- -CCAGCCgCCAGCGCUa-----GGGCCU--GCGc -5'
21394 5' -61.1 NC_004812.1 + 32999 0.76 0.231088
Target:  5'- cGGcCGGCGuUCGCGGgcgaCCGGGCGCGc -3'
miRNA:   3'- -CCaGCCGCcAGCGCUag--GGCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 79041 0.76 0.258304
Target:  5'- gGGUCGGgGGcCGCGG-CCCagcggccGGACGCGu -3'
miRNA:   3'- -CCAGCCgCCaGCGCUaGGG-------CCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 72251 0.75 0.264763
Target:  5'- cGGUCGGCGGgCGCGAgaCUGGAcCGCc -3'
miRNA:   3'- -CCAGCCGCCaGCGCUagGGCCU-GCGc -5'
21394 5' -61.1 NC_004812.1 + 77590 0.75 0.270748
Target:  5'- uGGUacCGGCGGUCGCGGgcgucCCCGGccagcaGCGCc -3'
miRNA:   3'- -CCA--GCCGCCAGCGCUa----GGGCC------UGCGc -5'
21394 5' -61.1 NC_004812.1 + 116499 0.75 0.283043
Target:  5'- gGGcCGGgGGUCGCGGa--CGGACGCGc -3'
miRNA:   3'- -CCaGCCgCCAGCGCUaggGCCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.