Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21395 | 3' | -57.6 | NC_004812.1 | + | 63856 | 0.66 | 0.869808 |
Target: 5'- ----cGCGGGCGGCCCg-CGcCCUCGu -3' miRNA: 3'- ucucuCGUUCGCUGGGgaGCaGGAGC- -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 115756 | 0.66 | 0.869808 |
Target: 5'- aGGAGGGuCGGGCGGCa-CUCGcUCUCGc -3' miRNA: 3'- -UCUCUC-GUUCGCUGggGAGCaGGAGC- -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 123778 | 0.66 | 0.869808 |
Target: 5'- cGAcGGGCgGAGCG-CCCCggcCGgagCCUCGg -3' miRNA: 3'- uCU-CUCG-UUCGCuGGGGa--GCa--GGAGC- -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 129023 | 0.66 | 0.869808 |
Target: 5'- -cGGGGCcGGCGGCCCCgggggCGgggCCgCGg -3' miRNA: 3'- ucUCUCGuUCGCUGGGGa----GCa--GGaGC- -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 3515 | 0.66 | 0.869808 |
Target: 5'- -cGGGGCcGGCGGCCCCgggggCGgggCCgCGg -3' miRNA: 3'- ucUCUCGuUCGCUGGGGa----GCa--GGaGC- -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 87325 | 0.66 | 0.869808 |
Target: 5'- cGAGGGCGAGC--CCCgUgG-CCUCGg -3' miRNA: 3'- uCUCUCGUUCGcuGGGgAgCaGGAGC- -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 60357 | 0.66 | 0.869808 |
Target: 5'- cGGccGGCAGGgCGGCCCCcUCGUgguUCUCGu -3' miRNA: 3'- -UCucUCGUUC-GCUGGGG-AGCA---GGAGC- -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 59702 | 0.66 | 0.867617 |
Target: 5'- gGGAGAGCGgcGGCGAgcggcgaggcgggcCCCCggGUCgUCu -3' miRNA: 3'- -UCUCUCGU--UCGCU--------------GGGGagCAGgAGc -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 82919 | 0.66 | 0.867617 |
Target: 5'- -cGGAGCAcaucuacaacuucuGGCG-CCucgaCCUCGUCCUCc -3' miRNA: 3'- ucUCUCGU--------------UCGCuGG----GGAGCAGGAGc -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 139887 | 0.66 | 0.862432 |
Target: 5'- cGAcGGGCGAGCGggaccgGCCCCgcgGUCgCUCGc -3' miRNA: 3'- uCU-CUCGUUCGC------UGGGGag-CAG-GAGC- -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 148263 | 0.66 | 0.862432 |
Target: 5'- cGGGAuGCGcgaucgcucuGGCGGCUUCUCGgcgcUCCUCGu -3' miRNA: 3'- uCUCU-CGU----------UCGCUGGGGAGC----AGGAGC- -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 140807 | 0.66 | 0.861683 |
Target: 5'- cGAGGcGCgAGGCGGCCgagCCggccuucgaggcgUCGUCCUCGc -3' miRNA: 3'- uCUCU-CG-UUCGCUGG---GG-------------AGCAGGAGC- -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 102966 | 0.66 | 0.854855 |
Target: 5'- --cGAGUA--CGGCCCCUCGuuccgcuucUCCUCGu -3' miRNA: 3'- ucuCUCGUucGCUGGGGAGC---------AGGAGC- -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 155480 | 0.66 | 0.854855 |
Target: 5'- cGGGGAGCcuGGCGGCCggcuucugCCUCG-CCggCGg -3' miRNA: 3'- -UCUCUCGu-UCGCUGG--------GGAGCaGGa-GC- -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 139704 | 0.66 | 0.854855 |
Target: 5'- cGGAGAcgGCGAGCuGCCCCggcCGagaaUCCUCc -3' miRNA: 3'- -UCUCU--CGUUCGcUGGGGa--GC----AGGAGc -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 8002 | 0.66 | 0.854855 |
Target: 5'- aGGGGGGCGcucccGCGACCCCggggggcgCGggccggCCUCc -3' miRNA: 3'- -UCUCUCGUu----CGCUGGGGa-------GCa-----GGAGc -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 40852 | 0.66 | 0.854855 |
Target: 5'- cGAGAGCGAGUGcCCgCC-CGacccUCCUCc -3' miRNA: 3'- uCUCUCGUUCGCuGG-GGaGC----AGGAGc -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 29971 | 0.66 | 0.854855 |
Target: 5'- cGGGGAGCcuGGCGGCCggcuucugCCUCG-CCggCGg -3' miRNA: 3'- -UCUCUCGu-UCGCUGG--------GGAGCaGGa-GC- -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 18115 | 0.66 | 0.854855 |
Target: 5'- uGGGAGU-AGCGGCCgCaCGUgCUCGg -3' miRNA: 3'- uCUCUCGuUCGCUGGgGaGCAgGAGC- -5' |
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21395 | 3' | -57.6 | NC_004812.1 | + | 14931 | 0.66 | 0.854086 |
Target: 5'- cGAaGGCGGGCGcgugcaugacgagGCCCaggucgUCGUCCUCGu -3' miRNA: 3'- uCUcUCGUUCGC-------------UGGGg-----AGCAGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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