miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21395 5' -56.4 NC_004812.1 + 104169 0.66 0.912489
Target:  5'- cGACGcGGGCGGGGGgauGGG-CgGCGAu -3'
miRNA:   3'- -CUGCuCUUGCCCCUag-CCUaGgCGCU- -5'
21395 5' -56.4 NC_004812.1 + 72346 0.66 0.918204
Target:  5'- cGGgGGGGAgGGGGggCGGGgggucucCCGCGu -3'
miRNA:   3'- -CUgCUCUUgCCCCuaGCCUa------GGCGCu -5'
21395 5' -56.4 NC_004812.1 + 90498 0.66 0.906546
Target:  5'- uGGCGGGAgggcGCGGGGAggGGGcgUCCGg-- -3'
miRNA:   3'- -CUGCUCU----UGCCCCUagCCU--AGGCgcu -5'
21395 5' -56.4 NC_004812.1 + 144657 0.66 0.906546
Target:  5'- cGACGAGGAgGGcGGGaCGGAggaacCCGCc- -3'
miRNA:   3'- -CUGCUCUUgCC-CCUaGCCUa----GGCGcu -5'
21395 5' -56.4 NC_004812.1 + 50628 0.66 0.906546
Target:  5'- aGCGAGAAguucgggcugUGGGGggCGGggCCcgGCGAc -3'
miRNA:   3'- cUGCUCUU----------GCCCCuaGCCuaGG--CGCU- -5'
21395 5' -56.4 NC_004812.1 + 151540 0.66 0.906546
Target:  5'- cGGCGAcGGCGGGGc-CGGggCCGgGGg -3'
miRNA:   3'- -CUGCUcUUGCCCCuaGCCuaGGCgCU- -5'
21395 5' -56.4 NC_004812.1 + 78951 0.66 0.918204
Target:  5'- -uCGGGGGugcgcCGGGGGUCGGGggugcgCCGgGGg -3'
miRNA:   3'- cuGCUCUU-----GCCCCUAGCCUa-----GGCgCU- -5'
21395 5' -56.4 NC_004812.1 + 155245 0.66 0.906546
Target:  5'- cGCGAGGGCGGGccGAggGGGggCGCGGc -3'
miRNA:   3'- cUGCUCUUGCCC--CUagCCUagGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 90065 0.66 0.918204
Target:  5'- cGGC-AGAGCGGGuGuacCGGcuguUCCGCGAg -3'
miRNA:   3'- -CUGcUCUUGCCC-Cua-GCCu---AGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 5981 0.66 0.912489
Target:  5'- gGGCGAGucGCGGGGugguaGGcgCCGgGGg -3'
miRNA:   3'- -CUGCUCu-UGCCCCuag--CCuaGGCgCU- -5'
21395 5' -56.4 NC_004812.1 + 78987 0.66 0.918204
Target:  5'- -uCGGGGGugcgcCGGGGGUCGGGggugcgCCGgGGg -3'
miRNA:   3'- cuGCUCUU-----GCCCCUAGCCUa-----GGCgCU- -5'
21395 5' -56.4 NC_004812.1 + 6466 0.66 0.906546
Target:  5'- cGCGGGccCGGGGAgCGGGccCUGCGGg -3'
miRNA:   3'- cUGCUCuuGCCCCUaGCCUa-GGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 155549 0.66 0.918204
Target:  5'- gGGCGGGAgggGCGGGGGagGGGggaggggcgCgCGCGGg -3'
miRNA:   3'- -CUGCUCU---UGCCCCUagCCUa--------G-GCGCU- -5'
21395 5' -56.4 NC_004812.1 + 123297 0.66 0.912489
Target:  5'- --gGGGGGCGGGGGggaCGGGUguaggugagUCGCGGg -3'
miRNA:   3'- cugCUCUUGCCCCUa--GCCUA---------GGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 147354 0.66 0.912489
Target:  5'- -cCGAGAAggaGGGGcGUCGcccuUCCGCGAg -3'
miRNA:   3'- cuGCUCUUg--CCCC-UAGCcu--AGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 121873 0.66 0.906546
Target:  5'- cGGCGcagaGGGGCGGGGccuggggCGGggCCGCa- -3'
miRNA:   3'- -CUGC----UCUUGCCCCua-----GCCuaGGCGcu -5'
21395 5' -56.4 NC_004812.1 + 59590 0.66 0.900376
Target:  5'- aGACGccGAugGGGGcgCGGGcggcgCuCGCGAa -3'
miRNA:   3'- -CUGCu-CUugCCCCuaGCCUa----G-GCGCU- -5'
21395 5' -56.4 NC_004812.1 + 122259 0.66 0.912489
Target:  5'- nGGCGGGGggccACGGGGAccaCGGGgggCGCGGc -3'
miRNA:   3'- -CUGCUCU----UGCCCCUa--GCCUag-GCGCU- -5'
21395 5' -56.4 NC_004812.1 + 36882 0.66 0.923689
Target:  5'- gGGCGAGuacGCGGGGugguaGGcgCCGgGGg -3'
miRNA:   3'- -CUGCUCu--UGCCCCuag--CCuaGGCgCU- -5'
21395 5' -56.4 NC_004812.1 + 128607 0.66 0.906546
Target:  5'- gGGCG-GGGCGGGGGa-GGcgCCGcCGAg -3'
miRNA:   3'- -CUGCuCUUGCCCCUagCCuaGGC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.