miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21395 5' -56.4 NC_004812.1 + 130184 1.08 0.003727
Target:  5'- gGACGAGAACGGGGAUCGGAUCCGCGAc -3'
miRNA:   3'- -CUGCUCUUGCCCCUAGCCUAGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 38592 0.79 0.294988
Target:  5'- gGGCGGGcGCGGGGGUCGcGccgaGUCCGCGGc -3'
miRNA:   3'- -CUGCUCuUGCCCCUAGC-C----UAGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 7691 0.79 0.294988
Target:  5'- gGGCGGGcGCGGGGGUCGcGccgaGUCCGCGGc -3'
miRNA:   3'- -CUGCUCuUGCCCCUAGC-C----UAGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 2317 0.78 0.308705
Target:  5'- --gGAGGACGGGGGcaUCGGGggucUCCGCGGa -3'
miRNA:   3'- cugCUCUUGCCCCU--AGCCU----AGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 33218 0.78 0.308705
Target:  5'- --gGAGGACGGGGGcaUCGGGggucUCCGCGGa -3'
miRNA:   3'- cugCUCUUGCCCCU--AGCCU----AGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 59311 0.77 0.376374
Target:  5'- cGCGAGcucguggucGACGGGGGUCGGGUCCcaCGAc -3'
miRNA:   3'- cUGCUC---------UUGCCCCUAGCCUAGGc-GCU- -5'
21395 5' -56.4 NC_004812.1 + 17784 0.76 0.401049
Target:  5'- gGGCGAGAACGGGG--UGGGUgCGCGc -3'
miRNA:   3'- -CUGCUCUUGCCCCuaGCCUAgGCGCu -5'
21395 5' -56.4 NC_004812.1 + 100902 0.76 0.418061
Target:  5'- -cCGAG-GCGGGGcgCGGAgacggCCGCGAg -3'
miRNA:   3'- cuGCUCuUGCCCCuaGCCUa----GGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 49149 0.75 0.435504
Target:  5'- aGCGGGcccUGGGGAUCGGcggcgaGUCCGCGAc -3'
miRNA:   3'- cUGCUCuu-GCCCCUAGCC------UAGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 57003 0.75 0.444382
Target:  5'- gGugGuGAGCGGGGGccugCGGAUCCcCGAg -3'
miRNA:   3'- -CugCuCUUGCCCCUa---GCCUAGGcGCU- -5'
21395 5' -56.4 NC_004812.1 + 89760 0.75 0.444382
Target:  5'- aACGAGuuCGGGGggCGGGUCUGCa- -3'
miRNA:   3'- cUGCUCuuGCCCCuaGCCUAGGCGcu -5'
21395 5' -56.4 NC_004812.1 + 126931 0.75 0.471608
Target:  5'- cGGCGGccGCGGGGAggggcCGGggCCGCGAg -3'
miRNA:   3'- -CUGCUcuUGCCCCUa----GCCuaGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 100870 0.75 0.471608
Target:  5'- cGCGGGGgagGCGGGGGagGGcgCCGCGGc -3'
miRNA:   3'- cUGCUCU---UGCCCCUagCCuaGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 1423 0.75 0.471608
Target:  5'- cGGCGGccGCGGGGAggggcCGGggCCGCGAg -3'
miRNA:   3'- -CUGCUcuUGCCCCUa----GCCuaGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 130486 0.75 0.471608
Target:  5'- cGGCGAG-GCGGGGGgcgaCGGGUCCGgGu -3'
miRNA:   3'- -CUGCUCuUGCCCCUa---GCCUAGGCgCu -5'
21395 5' -56.4 NC_004812.1 + 28488 0.75 0.48087
Target:  5'- cGGCGGcGGGCGGGGAaaGGGggcUCCGCGGc -3'
miRNA:   3'- -CUGCU-CUUGCCCCUagCCU---AGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 46632 0.75 0.48087
Target:  5'- aGACGAGggUGaggucgauguuGGGGUgGGGUCCGUGGc -3'
miRNA:   3'- -CUGCUCuuGC-----------CCCUAgCCUAGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 26483 0.74 0.49022
Target:  5'- uGCGcGGGCGGGGGacgaUCGG-UCCGCGGg -3'
miRNA:   3'- cUGCuCUUGCCCCU----AGCCuAGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 150815 0.74 0.499653
Target:  5'- cGACG-GAGCGGGGucgaGGAggaacgCCGCGAg -3'
miRNA:   3'- -CUGCuCUUGCCCCuag-CCUa-----GGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 25307 0.74 0.499653
Target:  5'- cGACG-GAGCGGGGucgaGGAggaacgCCGCGAg -3'
miRNA:   3'- -CUGCuCUUGCCCCuag-CCUa-----GGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.