miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21395 5' -56.4 NC_004812.1 + 740 0.68 0.810085
Target:  5'- cGGCGGGggUGGGGG-CGG---CGCGAc -3'
miRNA:   3'- -CUGCUCuuGCCCCUaGCCuagGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 882 0.67 0.866228
Target:  5'- -cCGGGGucgcCGGGGGUCcuggGGGUCCGgGGu -3'
miRNA:   3'- cuGCUCUu---GCCCCUAG----CCUAGGCgCU- -5'
21395 5' -56.4 NC_004812.1 + 934 0.67 0.866228
Target:  5'- -cCGGGGucgcCGGGGGUCcuggGGGUCCGgGGu -3'
miRNA:   3'- cuGCUCUu---GCCCCUAG----CCUAGGCgCU- -5'
21395 5' -56.4 NC_004812.1 + 1297 0.67 0.893981
Target:  5'- -cCGAGGGCGGuccgaGGG-CGG-UCCGCGGg -3'
miRNA:   3'- cuGCUCUUGCC-----CCUaGCCuAGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 1423 0.75 0.471608
Target:  5'- cGGCGGccGCGGGGAggggcCGGggCCGCGAg -3'
miRNA:   3'- -CUGCUcuUGCCCCUa----GCCuaGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 2050 0.67 0.887365
Target:  5'- cGGCGGGGggcGCGGGGGagGGGgcgcgccccCCGCGu -3'
miRNA:   3'- -CUGCUCU---UGCCCCUagCCUa--------GGCGCu -5'
21395 5' -56.4 NC_004812.1 + 2239 0.66 0.923689
Target:  5'- gGugGGGGucuCGGGGGUCucggGGGUCuCGgGGg -3'
miRNA:   3'- -CugCUCUu--GCCCCUAG----CCUAG-GCgCU- -5'
21395 5' -56.4 NC_004812.1 + 2250 0.69 0.76517
Target:  5'- cGCGGcGGCGGGGuccgcGUCGGcGUCCGCGc -3'
miRNA:   3'- cUGCUcUUGCCCC-----UAGCC-UAGGCGCu -5'
21395 5' -56.4 NC_004812.1 + 2317 0.78 0.308705
Target:  5'- --gGAGGACGGGGGcaUCGGGggucUCCGCGGa -3'
miRNA:   3'- cugCUCUUGCCCCU--AGCCU----AGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 3098 0.66 0.906546
Target:  5'- gGGCG-GGGCGGGGGa-GGcgCCGcCGAg -3'
miRNA:   3'- -CUGCuCUUGCCCCUagCCuaGGC-GCU- -5'
21395 5' -56.4 NC_004812.1 + 3334 0.67 0.873484
Target:  5'- cGGgGaAGAGCGGGuGGUCGGucagcUCgGCGAc -3'
miRNA:   3'- -CUgC-UCUUGCCC-CUAGCCu----AGgCGCU- -5'
21395 5' -56.4 NC_004812.1 + 3441 0.67 0.858769
Target:  5'- cGGCGccAGccgccGCGGGGGUCGGGcCCgGCGGg -3'
miRNA:   3'- -CUGC--UCu----UGCCCCUAGCCUaGG-CGCU- -5'
21395 5' -56.4 NC_004812.1 + 3521 0.68 0.818632
Target:  5'- cGGCGGcccCGGGGG-CGGggCCGCGGc -3'
miRNA:   3'- -CUGCUcuuGCCCCUaGCCuaGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 4197 0.68 0.827016
Target:  5'- cGGCGGGAACGGcGG---GGA-CCGCGGc -3'
miRNA:   3'- -CUGCUCUUGCC-CCuagCCUaGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 4717 0.67 0.880531
Target:  5'- cGCGAGGACGGGGcgUGugcCCGCu- -3'
miRNA:   3'- cUGCUCUUGCCCCuaGCcuaGGCGcu -5'
21395 5' -56.4 NC_004812.1 + 4797 0.68 0.827016
Target:  5'- gGGCGAGGgcuggugcggGCGcGGGGUCGGca-CGCGGc -3'
miRNA:   3'- -CUGCUCU----------UGC-CCCUAGCCuagGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 4850 0.7 0.755811
Target:  5'- uGCGGGGcCGGGGA--GGggCCGCGGc -3'
miRNA:   3'- cUGCUCUuGCCCCUagCCuaGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 4978 0.73 0.538139
Target:  5'- cGGCGAG-GCGGGGGcgaCGGGUCCGgGu -3'
miRNA:   3'- -CUGCUCuUGCCCCUa--GCCUAGGCgCu -5'
21395 5' -56.4 NC_004812.1 + 5099 0.67 0.880531
Target:  5'- -cCGGGGagGCGGGGGagucUgGGGUCCGgGGg -3'
miRNA:   3'- cuGCUCU--UGCCCCU----AgCCUAGGCgCU- -5'
21395 5' -56.4 NC_004812.1 + 5141 0.68 0.827016
Target:  5'- -cCGGGGACGGcGGcGUCGGc-CCGCGGu -3'
miRNA:   3'- cuGCUCUUGCC-CC-UAGCCuaGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.