miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21395 5' -56.4 NC_004812.1 + 54612 0.72 0.597566
Target:  5'- cGCGGGGACGGGcGGggcCGGAgaggcCCGCGGg -3'
miRNA:   3'- cUGCUCUUGCCC-CUa--GCCUa----GGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 71936 0.73 0.538139
Target:  5'- cGGCGAGGACGGcgcGGggCGGcccugCCGCGAc -3'
miRNA:   3'- -CUGCUCUUGCC---CCuaGCCua---GGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 139530 0.73 0.557766
Target:  5'- gGGCGGGGacagcgccACGGGGggCGcGUCCGCGGc -3'
miRNA:   3'- -CUGCUCU--------UGCCCCuaGCcUAGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 122548 0.73 0.561717
Target:  5'- gGGCGGGGggcGCGGGGGggggCGGAggggagcgcggcggCCGCGAc -3'
miRNA:   3'- -CUGCUCU---UGCCCCUa---GCCUa-------------GGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 106484 0.73 0.567657
Target:  5'- cACGcGAACccguggcuGGGGcgCGGGUCCGCGGc -3'
miRNA:   3'- cUGCuCUUG--------CCCCuaGCCUAGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 149105 0.73 0.567657
Target:  5'- cGCG-GGGCGGGGGUUGGGcgccccggucgUCCGCGc -3'
miRNA:   3'- cUGCuCUUGCCCCUAGCCU-----------AGGCGCu -5'
21395 5' -56.4 NC_004812.1 + 105468 0.73 0.567657
Target:  5'- aGCGAGGACGGGGAgCGGAggacggagCagGCGAc -3'
miRNA:   3'- cUGCUCUUGCCCCUaGCCUa-------Gg-CGCU- -5'
21395 5' -56.4 NC_004812.1 + 149637 0.73 0.577591
Target:  5'- cGAUGGGGGCGGGGGUgGGGgaagggggggCGCGAa -3'
miRNA:   3'- -CUGCUCUUGCCCCUAgCCUag--------GCGCU- -5'
21395 5' -56.4 NC_004812.1 + 7592 0.72 0.596565
Target:  5'- uGGCGGGGACGgaggcccGGGGUCGGAggUCGCGc -3'
miRNA:   3'- -CUGCUCUUGC-------CCCUAGCCUa-GGCGCu -5'
21395 5' -56.4 NC_004812.1 + 7551 0.74 0.518755
Target:  5'- gGACGGGGgagcGCGGGGAgacucuggggUCGGGUUCGCu- -3'
miRNA:   3'- -CUGCUCU----UGCCCCU----------AGCCUAGGCGcu -5'
21395 5' -56.4 NC_004812.1 + 156097 0.74 0.518755
Target:  5'- gGGCGGGAgacaGCGGGGAcCGGGggCCGgGAg -3'
miRNA:   3'- -CUGCUCU----UGCCCCUaGCCUa-GGCgCU- -5'
21395 5' -56.4 NC_004812.1 + 18865 0.74 0.509167
Target:  5'- aGCGGGuccCGGGGGUCGGcggcCCGCGGg -3'
miRNA:   3'- cUGCUCuu-GCCCCUAGCCua--GGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 2317 0.78 0.308705
Target:  5'- --gGAGGACGGGGGcaUCGGGggucUCCGCGGa -3'
miRNA:   3'- cugCUCUUGCCCCU--AGCCU----AGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 17784 0.76 0.401049
Target:  5'- gGGCGAGAACGGGG--UGGGUgCGCGc -3'
miRNA:   3'- -CUGCUCUUGCCCCuaGCCUAgGCGCu -5'
21395 5' -56.4 NC_004812.1 + 126931 0.75 0.471608
Target:  5'- cGGCGGccGCGGGGAggggcCGGggCCGCGAg -3'
miRNA:   3'- -CUGCUcuUGCCCCUa----GCCuaGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 130486 0.75 0.471608
Target:  5'- cGGCGAG-GCGGGGGgcgaCGGGUCCGgGu -3'
miRNA:   3'- -CUGCUCuUGCCCCUa---GCCUAGGCgCu -5'
21395 5' -56.4 NC_004812.1 + 46632 0.75 0.48087
Target:  5'- aGACGAGggUGaggucgauguuGGGGUgGGGUCCGUGGc -3'
miRNA:   3'- -CUGCUCuuGC-----------CCCUAgCCUAGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 28488 0.75 0.48087
Target:  5'- cGGCGGcGGGCGGGGAaaGGGggcUCCGCGGc -3'
miRNA:   3'- -CUGCU-CUUGCCCCUagCCU---AGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 26483 0.74 0.49022
Target:  5'- uGCGcGGGCGGGGGacgaUCGG-UCCGCGGg -3'
miRNA:   3'- cUGCuCUUGCCCCU----AGCCuAGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 150815 0.74 0.499653
Target:  5'- cGACG-GAGCGGGGucgaGGAggaacgCCGCGAg -3'
miRNA:   3'- -CUGCuCUUGCCCCuag-CCUa-----GGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.