miRNA display CGI


Results 1 - 20 of 1016 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21396 3' -60.5 NC_004812.1 + 55639 0.66 0.703491
Target:  5'- cGCCgGCGCUcGCggaCGUCCGCgGCGgCGCg -3'
miRNA:   3'- -CGG-UGCGGuUGg--GCAGGCG-UGCgGUG- -5'
21396 3' -60.5 NC_004812.1 + 49481 0.66 0.703491
Target:  5'- cGCCugacgGCGCUggAGCUCGUcaaCCGCAC-CCGCa -3'
miRNA:   3'- -CGG-----UGCGG--UUGGGCA---GGCGUGcGGUG- -5'
21396 3' -60.5 NC_004812.1 + 65941 0.66 0.703491
Target:  5'- cGCCGCGCCGcACCaCGa--GCACgaacgugcucuGCCACa -3'
miRNA:   3'- -CGGUGCGGU-UGG-GCaggCGUG-----------CGGUG- -5'
21396 3' -60.5 NC_004812.1 + 8327 0.66 0.703491
Target:  5'- gGCCgGCGCCG--CCG-CCGCGCuGCCGg -3'
miRNA:   3'- -CGG-UGCGGUugGGCaGGCGUG-CGGUg -5'
21396 3' -60.5 NC_004812.1 + 14119 0.66 0.703491
Target:  5'- cGCCGugcgugaacgcCGCCAGCCgCGUCaGgGCGCCc- -3'
miRNA:   3'- -CGGU-----------GCGGUUGG-GCAGgCgUGCGGug -5'
21396 3' -60.5 NC_004812.1 + 19689 0.66 0.713149
Target:  5'- uUCACGuCCAGCgCGgCgGCGCGCgGCg -3'
miRNA:   3'- cGGUGC-GGUUGgGCaGgCGUGCGgUG- -5'
21396 3' -60.5 NC_004812.1 + 137348 0.66 0.703491
Target:  5'- aCgGCGCUcGCCCGgcagCUGCuggGCGCCAUc -3'
miRNA:   3'- cGgUGCGGuUGGGCa---GGCG---UGCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 18595 0.66 0.707362
Target:  5'- cCCGCGCCGGcggcgucccggggguCCaCGUUCaGCACGCCcCa -3'
miRNA:   3'- cGGUGCGGUU---------------GG-GCAGG-CGUGCGGuG- -5'
21396 3' -60.5 NC_004812.1 + 124969 0.66 0.703491
Target:  5'- gGUCGCGCCGcCCCcacccCCGCcgGCGaCCGCg -3'
miRNA:   3'- -CGGUGCGGUuGGGca---GGCG--UGC-GGUG- -5'
21396 3' -60.5 NC_004812.1 + 34783 0.66 0.703491
Target:  5'- aGCUGCGCCGccuCCCGcgUCGCGCuCUGCa -3'
miRNA:   3'- -CGGUGCGGUu--GGGCa-GGCGUGcGGUG- -5'
21396 3' -60.5 NC_004812.1 + 29666 0.66 0.703491
Target:  5'- cCCGC-CCAucCCCG-CCG-ACGCCGCg -3'
miRNA:   3'- cGGUGcGGUu-GGGCaGGCgUGCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 26943 0.66 0.703491
Target:  5'- gGUCAcCGCCAGCCCGcagUCGUGCcCCAg -3'
miRNA:   3'- -CGGU-GCGGUUGGGCa--GGCGUGcGGUg -5'
21396 3' -60.5 NC_004812.1 + 126221 0.66 0.754769
Target:  5'- cGCCGCGcCCccggaggagagccccGACCCGgCCGCcgagcggcucgACGCgACg -3'
miRNA:   3'- -CGGUGC-GG---------------UUGGGCaGGCG-----------UGCGgUG- -5'
21396 3' -60.5 NC_004812.1 + 104701 0.66 0.703491
Target:  5'- gGCCGcCGCCAugCgggCGUgCGUggcCGCCACg -3'
miRNA:   3'- -CGGU-GCGGUugG---GCAgGCGu--GCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 80437 0.66 0.702522
Target:  5'- cGCCGC-CCAccccAgCCGcCCGCaagagggcgcgcgACGCCACa -3'
miRNA:   3'- -CGGUGcGGU----UgGGCaGGCG-------------UGCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 31757 0.66 0.703491
Target:  5'- gGgCGCGgC-GCCCGcCC-CACGCCACc -3'
miRNA:   3'- -CgGUGCgGuUGGGCaGGcGUGCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 84610 0.66 0.703491
Target:  5'- cGCCGCGaCGGCCCuaucUCCucgacccugGCgACGCCGCg -3'
miRNA:   3'- -CGGUGCgGUUGGGc---AGG---------CG-UGCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 151267 0.66 0.703491
Target:  5'- cGCCGCGCC--CCCGccgaccCCGgGCGgCGCc -3'
miRNA:   3'- -CGGUGCGGuuGGGCa-----GGCgUGCgGUG- -5'
21396 3' -60.5 NC_004812.1 + 8357 0.66 0.703491
Target:  5'- gGCCGC-CCcACCgCGUCgGCG-GCCGCc -3'
miRNA:   3'- -CGGUGcGGuUGG-GCAGgCGUgCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 131262 0.66 0.700582
Target:  5'- -aCGCGCCuccGgccccucuccucucCCCGUCCGCuCGCgGCg -3'
miRNA:   3'- cgGUGCGGu--U--------------GGGCAGGCGuGCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.