Results 1 - 20 of 1016 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 153022 | 0.79 | 0.157101 |
Target: 5'- cGCCggcGCGCCcGCCCG-CCGC-CGCCGCc -3' miRNA: 3'- -CGG---UGCGGuUGGGCaGGCGuGCGGUG- -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 83363 | 0.8 | 0.131701 |
Target: 5'- uCCGCGCCGGCCCcagggcggcggcgGUCCGCAgGCCGg -3' miRNA: 3'- cGGUGCGGUUGGG-------------CAGGCGUgCGGUg -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 152690 | 0.8 | 0.13203 |
Target: 5'- uGCCGCGCCGcgcgGCCCcgccgCCGCGcCGCCGCg -3' miRNA: 3'- -CGGUGCGGU----UGGGca---GGCGU-GCGGUG- -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 101234 | 0.8 | 0.135372 |
Target: 5'- cGCCGCGCCGGCCuCGacgggCCGCAgCGCCGu -3' miRNA: 3'- -CGGUGCGGUUGG-GCa----GGCGU-GCGGUg -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 112761 | 0.79 | 0.138791 |
Target: 5'- cGCCGCGCCcgGACUCGgcgCCGCGaGCCGCg -3' miRNA: 3'- -CGGUGCGG--UUGGGCa--GGCGUgCGGUG- -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 125660 | 0.79 | 0.138791 |
Target: 5'- cGCCGCGCCGccgcGCCCG-CgGCcCGCCGCg -3' miRNA: 3'- -CGGUGCGGU----UGGGCaGgCGuGCGGUG- -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 138169 | 0.79 | 0.142289 |
Target: 5'- cGCCGCGCCAccggacgcgGCCCccgCCGCGCGCgACc -3' miRNA: 3'- -CGGUGCGGU---------UGGGca-GGCGUGCGgUG- -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 141594 | 0.79 | 0.142289 |
Target: 5'- gGCCccuggGCGCCugcCCCGUCCGCAaccUGCCGCg -3' miRNA: 3'- -CGG-----UGCGGuu-GGGCAGGCGU---GCGGUG- -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 56238 | 0.79 | 0.157101 |
Target: 5'- cGgCGCGCCGACUCGUCCGCgggggcGCGCCccuGCg -3' miRNA: 3'- -CgGUGCGGUUGGGCAGGCG------UGCGG---UG- -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 67573 | 0.8 | 0.125575 |
Target: 5'- cGCCACGCCGGCCCucggugcaGUCCaacagGCGCGCgCACu -3' miRNA: 3'- -CGGUGCGGUUGGG--------CAGG-----CGUGCG-GUG- -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 36611 | 0.8 | 0.125575 |
Target: 5'- uUCACGCCcccGCCCGUCUcgugGCGCGCCACc -3' miRNA: 3'- cGGUGCGGu--UGGGCAGG----CGUGCGGUG- -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 112386 | 0.8 | 0.119413 |
Target: 5'- cGCgGCgGCCAcacgcguucGCCCGUCCGCGCcGCCGCc -3' miRNA: 3'- -CGgUG-CGGU---------UGGGCAGGCGUG-CGGUG- -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 73420 | 0.84 | 0.062885 |
Target: 5'- cGCCGCGCCucccgccgcgAGCuCCGgggCCGCGCGCCACg -3' miRNA: 3'- -CGGUGCGG----------UUG-GGCa--GGCGUGCGGUG- -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 96955 | 0.84 | 0.06624 |
Target: 5'- cCCGCGCCGGCCCGUCCGUcucaucccccGCgGCCGCu -3' miRNA: 3'- cGGUGCGGUUGGGCAGGCG----------UG-CGGUG- -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 133115 | 0.82 | 0.094296 |
Target: 5'- cGCCGCGcCCGGCCCG-CCGCAcacccuccuucccuCGCCGCg -3' miRNA: 3'- -CGGUGC-GGUUGGGCaGGCGU--------------GCGGUG- -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 154210 | 0.82 | 0.095998 |
Target: 5'- gGCCGCGCCGcugcgGCCCGUcuaccuggcgcuggaCCGCgACGCCGCg -3' miRNA: 3'- -CGGUGCGGU-----UGGGCA---------------GGCG-UGCGGUG- -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 154079 | 0.81 | 0.107925 |
Target: 5'- cGCCGCGCCGugCUGcCCGCGCucgacgGCCGCg -3' miRNA: 3'- -CGGUGCGGUugGGCaGGCGUG------CGGUG- -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 18558 | 0.81 | 0.110695 |
Target: 5'- cGCgGCGCgGGCCCGcUCCGC-CGCCGCc -3' miRNA: 3'- -CGgUGCGgUUGGGC-AGGCGuGCGGUG- -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 32686 | 0.8 | 0.116438 |
Target: 5'- gGCCGgGCCGGCCCGggaCCGCggGCGCCAg -3' miRNA: 3'- -CGGUgCGGUUGGGCa--GGCG--UGCGGUg -5' |
|||||||
21396 | 3' | -60.5 | NC_004812.1 | + | 22718 | 0.8 | 0.116438 |
Target: 5'- cGCCGCGaCCGagggcgacgaGCCCGUCuCGCGCGCgGCg -3' miRNA: 3'- -CGGUGC-GGU----------UGGGCAG-GCGUGCGgUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home