miRNA display CGI


Results 1 - 20 of 1016 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21396 3' -60.5 NC_004812.1 + 109 0.73 0.353791
Target:  5'- cGCgCGCGCCccGGCCCGUCCcucgcgaGUGCGCgCGCg -3'
miRNA:   3'- -CG-GUGCGG--UUGGGCAGG-------CGUGCG-GUG- -5'
21396 3' -60.5 NC_004812.1 + 151 0.79 0.138791
Target:  5'- cGCCGCGCCGccgcGCCCG-CgGCcCGCCGCg -3'
miRNA:   3'- -CGGUGCGGU----UGGGCaGgCGuGCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 194 0.67 0.674212
Target:  5'- cGCgCGCGCCGccgggggaggGCCCGggUCGCGCaGCCcCg -3'
miRNA:   3'- -CG-GUGCGGU----------UGGGCa-GGCGUG-CGGuG- -5'
21396 3' -60.5 NC_004812.1 + 410 0.71 0.436056
Target:  5'- -aCGCGCgCAGgCCuUCCGCGCGCgGCg -3'
miRNA:   3'- cgGUGCG-GUUgGGcAGGCGUGCGgUG- -5'
21396 3' -60.5 NC_004812.1 + 447 0.73 0.347013
Target:  5'- cGCC-CGCCGcgaGCCCGggccgCCgGCGCGCCuGCg -3'
miRNA:   3'- -CGGuGCGGU---UGGGCa----GG-CGUGCGG-UG- -5'
21396 3' -60.5 NC_004812.1 + 470 0.71 0.418895
Target:  5'- cCCGCGCC--CCgCGUCCGCGCgGCC-Cg -3'
miRNA:   3'- cGGUGCGGuuGG-GCAGGCGUG-CGGuG- -5'
21396 3' -60.5 NC_004812.1 + 514 0.68 0.605122
Target:  5'- cGCCGCgGCCGGggCGggcCCGCGCGCC-Cg -3'
miRNA:   3'- -CGGUG-CGGUUggGCa--GGCGUGCGGuG- -5'
21396 3' -60.5 NC_004812.1 + 565 0.78 0.173293
Target:  5'- cGCgACGCCcGCCCGUCC-CGCGgCGCg -3'
miRNA:   3'- -CGgUGCGGuUGGGCAGGcGUGCgGUG- -5'
21396 3' -60.5 NC_004812.1 + 596 0.67 0.684014
Target:  5'- gGCUccgguaGCGCgGACCCGaUCCGcCGCGCgAg -3'
miRNA:   3'- -CGG------UGCGgUUGGGC-AGGC-GUGCGgUg -5'
21396 3' -60.5 NC_004812.1 + 759 0.7 0.51787
Target:  5'- cGCCuCGCCu-CCCGgcgCCGCGgGCCc- -3'
miRNA:   3'- -CGGuGCGGuuGGGCa--GGCGUgCGGug -5'
21396 3' -60.5 NC_004812.1 + 797 0.67 0.693777
Target:  5'- gGCCGcCGCC--CCCG-CCGC-CGCC-Cg -3'
miRNA:   3'- -CGGU-GCGGuuGGGCaGGCGuGCGGuG- -5'
21396 3' -60.5 NC_004812.1 + 869 0.68 0.605122
Target:  5'- gGCCGCGagc-CCCGcCCGCGCGCg-- -3'
miRNA:   3'- -CGGUGCgguuGGGCaGGCGUGCGgug -5'
21396 3' -60.5 NC_004812.1 + 926 0.78 0.173293
Target:  5'- cGCgCGCGCCgAGCCCG-CCGCGCGCUc- -3'
miRNA:   3'- -CG-GUGCGG-UUGGGCaGGCGUGCGGug -5'
21396 3' -60.5 NC_004812.1 + 1019 0.76 0.231053
Target:  5'- gGCCGCGCCcccgcgagGGCCCGgCCGCcCGCgCGCg -3'
miRNA:   3'- -CGGUGCGG--------UUGGGCaGGCGuGCG-GUG- -5'
21396 3' -60.5 NC_004812.1 + 1104 0.66 0.741704
Target:  5'- uGCC-CGgCGGCCCGggUCGCuuCGCCGg -3'
miRNA:   3'- -CGGuGCgGUUGGGCa-GGCGu-GCGGUg -5'
21396 3' -60.5 NC_004812.1 + 1154 0.69 0.546518
Target:  5'- gGCgGCGCgAGCCCGgccccCCGCucccuCGUCGCc -3'
miRNA:   3'- -CGgUGCGgUUGGGCa----GGCGu----GCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 1255 0.72 0.402151
Target:  5'- cGCCGCGgCcGCCCGuuggUCCGC-CGgCCGCg -3'
miRNA:   3'- -CGGUGCgGuUGGGC----AGGCGuGC-GGUG- -5'
21396 3' -60.5 NC_004812.1 + 1328 0.73 0.337387
Target:  5'- cGCCGCGCCccGCCCcuccccgguuuggcGUCCGCcGCGCCc- -3'
miRNA:   3'- -CGGUGCGGu-UGGG--------------CAGGCG-UGCGGug -5'
21396 3' -60.5 NC_004812.1 + 1376 0.74 0.311064
Target:  5'- cGCCguGCGCgaCGGCCCGcCC-CGCGCCGCg -3'
miRNA:   3'- -CGG--UGCG--GUUGGGCaGGcGUGCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 1460 0.71 0.462537
Target:  5'- cCCACGaCCGcccucgACCCGgccccCCGC-CGCCGCg -3'
miRNA:   3'- cGGUGC-GGU------UGGGCa----GGCGuGCGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.