miRNA display CGI

Results 1 - 20 of 1016 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21396	3'	-60.5	NC_004812.1	+	130063	1.11	0.000881
	Target:  5'- uGCCACGCCAACCCGUCCGCACGCCACg -3' miRNA:   3'- -CGGUGCGGUUGGGCAGGCGUGCGGUG- -5'
21396	3'	-60.5	NC_004812.1	+	153384	0.85	0.061269
	Target:  5'- gGCCGCGCCuucgGCCCG-CCGCGCGCCuCg -3' miRNA:   3'- -CGGUGCGGu---UGGGCaGGCGUGCGGuG- -5'
21396	3'	-60.5	NC_004812.1	+	27876	0.85	0.061269
	Target:  5'- gGCCGCGCCuucGGCCCG-CCGCGCGCCuCg -3' miRNA:   3'- -CGGUGCGG---UUGGGCaGGCGUGCGGuG- -5'
21396	3'	-60.5	NC_004812.1	+	73420	0.84	0.062885
	Target:  5'- cGCCGCGCCucccgccgcgAGCuCCGgggCCGCGCGCCACg -3' miRNA:   3'- -CGGUGCGG----------UUG-GGCa--GGCGUGCGGUG- -5'
21396	3'	-60.5	NC_004812.1	+	96955	0.84	0.06624
	Target:  5'- cCCGCGCCGGCCCGUCCGUcucaucccccGCgGCCGCu -3' miRNA:   3'- cGGUGCGGUUGGGCAGGCG----------UG-CGGUG- -5'
21396	3'	-60.5	NC_004812.1	+	133115	0.82	0.094296
	Target:  5'- cGCCGCGcCCGGCCCG-CCGCAcacccuccuucccuCGCCGCg -3' miRNA:   3'- -CGGUGC-GGUUGGGCaGGCGU--------------GCGGUG- -5'
21396	3'	-60.5	NC_004812.1	+	7607	0.82	0.094296
	Target:  5'- cGCCGCGcCCGGCCCG-CCGCAcacccuccuucccuCGCCGCg -3' miRNA:   3'- -CGGUGC-GGUUGGGCaGGCGU--------------GCGGUG- -5'
21396	3'	-60.5	NC_004812.1	+	28702	0.82	0.095998
	Target:  5'- gGCCGCGCCGcugcgGCCCGUcuaccuggcgcuggaCCGCgACGCCGCg -3' miRNA:   3'- -CGGUGCGGU-----UGGGCA---------------GGCG-UGCGGUG- -5'
21396	3'	-60.5	NC_004812.1	+	154210	0.82	0.095998
	Target:  5'- gGCCGCGCCGcugcgGCCCGUcuaccuggcgcuggaCCGCgACGCCGCg -3' miRNA:   3'- -CGGUGCGGU-----UGGGCA---------------GGCG-UGCGGUG- -5'
21396	3'	-60.5	NC_004812.1	+	110016	0.81	0.102577
	Target:  5'- cGUCGCGCCGcuccugugcuACCCGgCCGCGCGCUACc -3' miRNA:   3'- -CGGUGCGGU----------UGGGCaGGCGUGCGGUG- -5'
21396	3'	-60.5	NC_004812.1	+	138259	0.81	0.105219
	Target:  5'- cGCCGCGgCGGCCgCGgUCGCGCGCCGCg -3' miRNA:   3'- -CGGUGCgGUUGG-GCaGGCGUGCGGUG- -5'
21396	3'	-60.5	NC_004812.1	+	154079	0.81	0.107925
	Target:  5'- cGCCGCGCCGugCUGcCCGCGCucgacgGCCGCg -3' miRNA:   3'- -CGGUGCGGUugGGCaGGCGUG------CGGUG- -5'
21396	3'	-60.5	NC_004812.1	+	28571	0.81	0.107925
	Target:  5'- cGCCGCGCCGugCUGcCCGCGCucgacgGCCGCg -3' miRNA:   3'- -CGGUGCGGUugGGCaGGCGUG------CGGUG- -5'
21396	3'	-60.5	NC_004812.1	+	18558	0.81	0.110695
	Target:  5'- cGCgGCGCgGGCCCGcUCCGC-CGCCGCc -3' miRNA:   3'- -CGgUGCGgUUGGGC-AGGCGuGCGGUG- -5'
21396	3'	-60.5	NC_004812.1	+	22718	0.8	0.116438
	Target:  5'- cGCCGCGaCCGagggcgacgaGCCCGUCuCGCGCGCgGCg -3' miRNA:   3'- -CGGUGC-GGU----------UGGGCAG-GCGUGCGgUG- -5'
21396	3'	-60.5	NC_004812.1	+	32686	0.8	0.116438
	Target:  5'- gGCCGgGCCGGCCCGggaCCGCggGCGCCAg -3' miRNA:   3'- -CGGUgCGGUUGGGCa--GGCG--UGCGGUg -5'
21396	3'	-60.5	NC_004812.1	+	112386	0.8	0.119413
	Target:  5'- cGCgGCgGCCAcacgcguucGCCCGUCCGCGCcGCCGCc -3' miRNA:   3'- -CGgUG-CGGU---------UGGGCAGGCGUG-CGGUG- -5'
21396	3'	-60.5	NC_004812.1	+	52584	0.8	0.119413
	Target:  5'- cGCCGCGaCGGCCCcgaggCCGUACGCCACg -3' miRNA:   3'- -CGGUGCgGUUGGGca---GGCGUGCGGUG- -5'
21396	3'	-60.5	NC_004812.1	+	36611	0.8	0.125575
	Target:  5'- uUCACGCCcccGCCCGUCUcgugGCGCGCCACc -3' miRNA:   3'- cGGUGCGGu--UGGGCAGG----CGUGCGGUG- -5'
21396	3'	-60.5	NC_004812.1	+	67573	0.8	0.125575
	Target:  5'- cGCCACGCCGGCCCucggugcaGUCCaacagGCGCGCgCACu -3' miRNA:   3'- -CGGUGCGGUUGGG--------CAGG-----CGUGCG-GUG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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