Results 1 - 20 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21396 | 5' | -57.4 | NC_004812.1 | + | 96445 | 0.66 | 0.859306 |
Target: 5'- gGGGUG-GAgcUGCAGugGcuGCugggggccgacccGGCCCCCGc -3' miRNA: 3'- -UCCACaCU--ACGUCugC--UG-------------CUGGGGGC- -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 153264 | 0.66 | 0.881701 |
Target: 5'- gGGGgccggGgcGCGGggcGCGGCGGCCCCuCGg -3' miRNA: 3'- -UCCaca--CuaCGUC---UGCUGCUGGGG-GC- -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 67351 | 0.66 | 0.881701 |
Target: 5'- ----cUGGUGCAGACGAUGuugucgUCCCCGc -3' miRNA: 3'- uccacACUACGUCUGCUGCu-----GGGGGC- -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 57358 | 0.66 | 0.874695 |
Target: 5'- cGGUGc-GUGCcuccGGCccgGACGGCCCCCGc -3' miRNA: 3'- uCCACacUACGu---CUG---CUGCUGGGGGC- -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 79194 | 0.66 | 0.874695 |
Target: 5'- uGGUGcagcGCGGGCGAgaccuggaGGCCCCCGc -3' miRNA: 3'- uCCACacuaCGUCUGCUg-------CUGGGGGC- -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 118406 | 0.66 | 0.888493 |
Target: 5'- -cGUGggGGUcGCGGAUGugGACCUgCCGg -3' miRNA: 3'- ucCACa-CUA-CGUCUGCugCUGGG-GGC- -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 15114 | 0.66 | 0.860059 |
Target: 5'- uGGUGcGccgGUAcGGCGGCG-CCCCCGa -3' miRNA: 3'- uCCACaCua-CGU-CUGCUGCuGGGGGC- -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 141857 | 0.66 | 0.880316 |
Target: 5'- aGGGcGUGAcgGUGGACGGCaucggcaugcuCCCCCGg -3' miRNA: 3'- -UCCaCACUa-CGUCUGCUGcu---------GGGGGC- -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 124684 | 0.66 | 0.88101 |
Target: 5'- gGGGUuguagccgcGUGAcgucaaUGgGGGCGACcccggacccccagGACCCCCGg -3' miRNA: 3'- -UCCA---------CACU------ACgUCUGCUG-------------CUGGGGGC- -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 125422 | 0.66 | 0.860059 |
Target: 5'- cGGgacGAcccUGCGGACGACGgACCgCCCa -3' miRNA: 3'- uCCacaCU---ACGUCUGCUGC-UGG-GGGc -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 19241 | 0.66 | 0.881701 |
Target: 5'- -cGUG-GAUGUAGuCGAUGGCgCCCa -3' miRNA: 3'- ucCACaCUACGUCuGCUGCUGgGGGc -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 80282 | 0.66 | 0.852441 |
Target: 5'- cGGUGcggcggGAgaacccccagGCGGACGGCGACCgCgCCGc -3' miRNA: 3'- uCCACa-----CUa---------CGUCUGCUGCUGG-G-GGC- -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 104229 | 0.66 | 0.881701 |
Target: 5'- gAGcGUGUG-UGcCAGgugcGCGGCGcGCCCCCa -3' miRNA: 3'- -UC-CACACuAC-GUC----UGCUGC-UGGGGGc -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 80838 | 0.66 | 0.860059 |
Target: 5'- gGGGgcaccGUGGUGguGcCGAgCGGCCCCa- -3' miRNA: 3'- -UCCa----CACUACguCuGCU-GCUGGGGgc -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 48952 | 0.66 | 0.888493 |
Target: 5'- cGGcGUGcUGCcggccgcccccGGCGACGugCCCCGc -3' miRNA: 3'- uCCaCACuACGu----------CUGCUGCugGGGGC- -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 19903 | 0.66 | 0.852441 |
Target: 5'- uGGGUGcUGGggGCcGGaaaGGCGACgCCCCGg -3' miRNA: 3'- -UCCAC-ACUa-CGuCUg--CUGCUG-GGGGC- -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 83662 | 0.66 | 0.881701 |
Target: 5'- gAGGUcGUGucguccgacGUGgAGACGugGGCCaCCGa -3' miRNA: 3'- -UCCA-CAC---------UACgUCUGCugCUGGgGGC- -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 85655 | 0.66 | 0.867479 |
Target: 5'- gGGGcGcUGGUGCcgGGGCGgguuGCGGuCCCCCGa -3' miRNA: 3'- -UCCaC-ACUACG--UCUGC----UGCU-GGGGGC- -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 155585 | 0.66 | 0.88101 |
Target: 5'- gGGGUuguagccgcGUGAcgucaaUGgGGGCGACcccggacccccagGACCCCCGg -3' miRNA: 3'- -UCCA---------CACU------ACgUCUGCUG-------------CUGGGGGC- -5' |
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21396 | 5' | -57.4 | NC_004812.1 | + | 121979 | 0.66 | 0.874695 |
Target: 5'- cGGGUGUGcacGUu--CGACGGCCCCg- -3' miRNA: 3'- -UCCACACua-CGucuGCUGCUGGGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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