miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21396 5' -57.4 NC_004812.1 + 130099 1.08 0.002942
Target:  5'- cAGGUGUGAUGCAGACGACGACCCCCGc -3'
miRNA:   3'- -UCCACACUACGUCUGCUGCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 18821 0.81 0.170581
Target:  5'- cGGGUGUGcgGCGGGCGGCGguugcgcGCCgCCCGg -3'
miRNA:   3'- -UCCACACuaCGUCUGCUGC-------UGG-GGGC- -5'
21396 5' -57.4 NC_004812.1 + 100457 0.78 0.264128
Target:  5'- aGGGcGUGGUGCGGGCGuagaggggcGCGGCCgCCCGg -3'
miRNA:   3'- -UCCaCACUACGUCUGC---------UGCUGG-GGGC- -5'
21396 5' -57.4 NC_004812.1 + 50082 0.78 0.282507
Target:  5'- gAGGUGgggcgcGUGCuggccguGGugGACGACCCCCGg -3'
miRNA:   3'- -UCCACac----UACG-------UCugCUGCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 70037 0.77 0.317258
Target:  5'- cGGGUGgGGUGacaaAGGCGACGACCgCCGc -3'
miRNA:   3'- -UCCACaCUACg---UCUGCUGCUGGgGGC- -5'
21396 5' -57.4 NC_004812.1 + 144859 0.74 0.419819
Target:  5'- uGGUGUgGGUGCGGuuCGACG-UCCCCGa -3'
miRNA:   3'- uCCACA-CUACGUCu-GCUGCuGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 75660 0.74 0.428503
Target:  5'- gAGGUGUug-GCGGACGugGAcgaggacggcCCCCCGc -3'
miRNA:   3'- -UCCACAcuaCGUCUGCugCU----------GGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 125339 0.74 0.446185
Target:  5'- cGGUucGUGccGcCGGGCGACGACCuCCCGg -3'
miRNA:   3'- uCCA--CACuaC-GUCUGCUGCUGG-GGGC- -5'
21396 5' -57.4 NC_004812.1 + 72177 0.74 0.464267
Target:  5'- aGGGUGcugGGUGCGGcCGGgGGCCCCgGg -3'
miRNA:   3'- -UCCACa--CUACGUCuGCUgCUGGGGgC- -5'
21396 5' -57.4 NC_004812.1 + 145813 0.74 0.464267
Target:  5'- cGGUGUGGgcgGCGGGguCGGCGGCCcacgCCCGg -3'
miRNA:   3'- uCCACACUa--CGUCU--GCUGCUGG----GGGC- -5'
21396 5' -57.4 NC_004812.1 + 16554 0.73 0.482723
Target:  5'- cGGGUGUaccgcacucGAUGUugGGACGGCGACCgggCCCGc -3'
miRNA:   3'- -UCCACA---------CUACG--UCUGCUGCUGG---GGGC- -5'
21396 5' -57.4 NC_004812.1 + 124854 0.73 0.492083
Target:  5'- uGGcGUGggGCGGGCGcCGcGCCCCCGc -3'
miRNA:   3'- uCCaCACuaCGUCUGCuGC-UGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 32827 0.72 0.540041
Target:  5'- cGGacgaGUGGggGCGGGgGGCGGCCCCCa -3'
miRNA:   3'- uCCa---CACUa-CGUCUgCUGCUGGGGGc -5'
21396 5' -57.4 NC_004812.1 + 32831 0.72 0.540041
Target:  5'- cGaGUG-GggGCGGGgGGCGGCCCCCa -3'
miRNA:   3'- uC-CACaCuaCGUCUgCUGCUGGGGGc -5'
21396 5' -57.4 NC_004812.1 + 53947 0.72 0.559675
Target:  5'- cGG-GUGAgGUc-ACGGCGACCCCCGg -3'
miRNA:   3'- uCCaCACUaCGucUGCUGCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 56504 0.72 0.559675
Target:  5'- gGGGUGggacgGGUcGCuaaucucgggggGGACGACGAgCCCCGa -3'
miRNA:   3'- -UCCACa----CUA-CG------------UCUGCUGCUgGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 39384 0.72 0.569568
Target:  5'- gAGGUGgaGAUcgaGCGGcCGGCGGCCgCCCGa -3'
miRNA:   3'- -UCCACa-CUA---CGUCuGCUGCUGG-GGGC- -5'
21396 5' -57.4 NC_004812.1 + 8483 0.72 0.569568
Target:  5'- gAGGUGgaGAUcgaGCGGcCGGCGGCCgCCCGa -3'
miRNA:   3'- -UCCACa-CUA---CGUCuGCUGCUGG-GGGC- -5'
21396 5' -57.4 NC_004812.1 + 45257 0.71 0.596473
Target:  5'- cGGUGgGGUcucggggguccucgGCGGGCgGGCGACCCCCc -3'
miRNA:   3'- uCCACaCUA--------------CGUCUG-CUGCUGGGGGc -5'
21396 5' -57.4 NC_004812.1 + 53438 0.71 0.6095
Target:  5'- cGGGgccgc-GCuGACGGCGGCCCCCGc -3'
miRNA:   3'- -UCCacacuaCGuCUGCUGCUGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.