miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21396 5' -57.4 NC_004812.1 + 135918 0.68 0.766831
Target:  5'- gAGGgaccgGAaGCAGGCGGCGGCgUCCGc -3'
miRNA:   3'- -UCCaca--CUaCGUCUGCUGCUGgGGGC- -5'
21396 5' -57.4 NC_004812.1 + 6825 0.69 0.719183
Target:  5'- gGGGcUG-GGUgGgGGGCGGCGGCCCUCGc -3'
miRNA:   3'- -UCC-ACaCUA-CgUCUGCUGCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 126800 0.69 0.719183
Target:  5'- aGGGUccccgGAgGCgGGGCGcCGACCCCCGg -3'
miRNA:   3'- -UCCAca---CUaCG-UCUGCuGCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 94044 0.69 0.725987
Target:  5'- cGGGUGUGAa--GGACGccgaggauccucagGgGGCCCCCGg -3'
miRNA:   3'- -UCCACACUacgUCUGC--------------UgCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 72474 0.69 0.738519
Target:  5'- uGGUGgGAgGgGGGCGGCGGCgCCUCGg -3'
miRNA:   3'- uCCACaCUaCgUCUGCUGCUG-GGGGC- -5'
21396 5' -57.4 NC_004812.1 + 47199 0.69 0.738519
Target:  5'- gAGGUG-GAccUGgGGGCG-CGGCgCCCCGa -3'
miRNA:   3'- -UCCACaCU--ACgUCUGCuGCUG-GGGGC- -5'
21396 5' -57.4 NC_004812.1 + 4801 0.68 0.748058
Target:  5'- gAGGgcUGGUGCGGGCGcggggucggcacGCGGCCCCg- -3'
miRNA:   3'- -UCCacACUACGUCUGC------------UGCUGGGGgc -5'
21396 5' -57.4 NC_004812.1 + 35358 0.68 0.748058
Target:  5'- aGGGUGUccg--GGGCGACGcCCCCCGu -3'
miRNA:   3'- -UCCACAcuacgUCUGCUGCuGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 86766 0.68 0.765903
Target:  5'- cGGUcGUcgagcaguucuggGAcGCGGACGGCGAaCCCCCu -3'
miRNA:   3'- uCCA-CA-------------CUaCGUCUGCUGCU-GGGGGc -5'
21396 5' -57.4 NC_004812.1 + 41200 0.7 0.679717
Target:  5'- cGGGcGUGAaGUugaaggGGAaGACGGCCCCCGg -3'
miRNA:   3'- -UCCaCACUaCG------UCUgCUGCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 112594 0.7 0.669735
Target:  5'- -----gGAcGCGGACGACG-CCCCCGg -3'
miRNA:   3'- uccacaCUaCGUCUGCUGCuGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 55884 0.7 0.669735
Target:  5'- cAGGUGUGGUcguagcacgcGCGGAUGAgGGCCUCg- -3'
miRNA:   3'- -UCCACACUA----------CGUCUGCUgCUGGGGgc -5'
21396 5' -57.4 NC_004812.1 + 50082 0.78 0.282507
Target:  5'- gAGGUGgggcgcGUGCuggccguGGugGACGACCCCCGg -3'
miRNA:   3'- -UCCACac----UACG-------UCugCUGCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 144859 0.74 0.419819
Target:  5'- uGGUGUgGGUGCGGuuCGACG-UCCCCGa -3'
miRNA:   3'- uCCACA-CUACGUCu-GCUGCuGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 72177 0.74 0.464267
Target:  5'- aGGGUGcugGGUGCGGcCGGgGGCCCCgGg -3'
miRNA:   3'- -UCCACa--CUACGUCuGCUgCUGGGGgC- -5'
21396 5' -57.4 NC_004812.1 + 32831 0.72 0.540041
Target:  5'- cGaGUG-GggGCGGGgGGCGGCCCCCa -3'
miRNA:   3'- uC-CACaCuaCGUCUgCUGCUGGGGGc -5'
21396 5' -57.4 NC_004812.1 + 56504 0.72 0.559675
Target:  5'- gGGGUGggacgGGUcGCuaaucucgggggGGACGACGAgCCCCGa -3'
miRNA:   3'- -UCCACa----CUA-CG------------UCUGCUGCUgGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 8483 0.72 0.569568
Target:  5'- gAGGUGgaGAUcgaGCGGcCGGCGGCCgCCCGa -3'
miRNA:   3'- -UCCACa-CUA---CGUCuGCUGCUGG-GGGC- -5'
21396 5' -57.4 NC_004812.1 + 149001 0.7 0.648686
Target:  5'- aGGGUGUGcgGCGGgccgggcGCGGCGGCgCCgGc -3'
miRNA:   3'- -UCCACACuaCGUC-------UGCUGCUGgGGgC- -5'
21396 5' -57.4 NC_004812.1 + 60936 0.7 0.669735
Target:  5'- cGGcGUGAgcuugagGgAGACGGCGGucCCCCCGa -3'
miRNA:   3'- uCCaCACUa------CgUCUGCUGCU--GGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.