miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21396 5' -57.4 NC_004812.1 + 745 0.67 0.828456
Target:  5'- gGGGUG-GggGCGG-CG-CGACCCUCu -3'
miRNA:   3'- -UCCACaCuaCGUCuGCuGCUGGGGGc -5'
21396 5' -57.4 NC_004812.1 + 1292 0.69 0.719183
Target:  5'- aGGGUccccgGAgGCgGGGCGcCGACCCCCGg -3'
miRNA:   3'- -UCCAca---CUaCG-UCUGCuGCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 4801 0.68 0.748058
Target:  5'- gAGGgcUGGUGCGGGCGcggggucggcacGCGGCCCCg- -3'
miRNA:   3'- -UCCacACUACGUCUGC------------UGCUGGGGgc -5'
21396 5' -57.4 NC_004812.1 + 6825 0.69 0.719183
Target:  5'- gGGGcUG-GGUgGgGGGCGGCGGCCCUCGc -3'
miRNA:   3'- -UCC-ACaCUA-CgUCUGCUGCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 8483 0.72 0.569568
Target:  5'- gAGGUGgaGAUcgaGCGGcCGGCGGCCgCCCGa -3'
miRNA:   3'- -UCCACa-CUA---CGUCuGCUGCUGG-GGGC- -5'
21396 5' -57.4 NC_004812.1 + 11925 0.67 0.836632
Target:  5'- gGGGUcUGccGgAcGACGACGGCCCCgCGa -3'
miRNA:   3'- -UCCAcACuaCgU-CUGCUGCUGGGG-GC- -5'
21396 5' -57.4 NC_004812.1 + 14484 0.66 0.888493
Target:  5'- cGGGgcccugGAUGguGACGucggaGGCCUCCGg -3'
miRNA:   3'- -UCCaca---CUACguCUGCug---CUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 15114 0.66 0.860059
Target:  5'- uGGUGcGccgGUAcGGCGGCG-CCCCCGa -3'
miRNA:   3'- uCCACaCua-CGU-CUGCUGCuGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 16554 0.73 0.482723
Target:  5'- cGGGUGUaccgcacucGAUGUugGGACGGCGACCgggCCCGc -3'
miRNA:   3'- -UCCACA---------CUACG--UCUGCUGCUGG---GGGC- -5'
21396 5' -57.4 NC_004812.1 + 17417 0.69 0.738519
Target:  5'- gGGGUgGUGGUGgGGGCGggggugGCGGCCguCCCGu -3'
miRNA:   3'- -UCCA-CACUACgUCUGC------UGCUGG--GGGC- -5'
21396 5' -57.4 NC_004812.1 + 18821 0.81 0.170581
Target:  5'- cGGGUGUGcgGCGGGCGGCGguugcgcGCCgCCCGg -3'
miRNA:   3'- -UCCACACuaCGUCUGCUGC-------UGG-GGGC- -5'
21396 5' -57.4 NC_004812.1 + 19241 0.66 0.881701
Target:  5'- -cGUG-GAUGUAGuCGAUGGCgCCCa -3'
miRNA:   3'- ucCACaCUACGUCuGCUGCUGgGGGc -5'
21396 5' -57.4 NC_004812.1 + 19295 0.67 0.836632
Target:  5'- cGGUGUcGA-GgGGGCGAacgcgGGCCCCCa -3'
miRNA:   3'- uCCACA-CUaCgUCUGCUg----CUGGGGGc -5'
21396 5' -57.4 NC_004812.1 + 19903 0.66 0.852441
Target:  5'- uGGGUGcUGGggGCcGGaaaGGCGACgCCCCGg -3'
miRNA:   3'- -UCCAC-ACUa-CGuCUg--CUGCUG-GGGGC- -5'
21396 5' -57.4 NC_004812.1 + 23493 0.7 0.648686
Target:  5'- aGGGUGUGcgGCGGgccgggcGCGGCGGCgCCgGc -3'
miRNA:   3'- -UCCACACuaCGUC-------UGCUGCUGgGGgC- -5'
21396 5' -57.4 NC_004812.1 + 25713 0.67 0.819263
Target:  5'- cAGGUcGUGGuUGUucaucagccacugGGGCGAgaaacaCGGCCCCCGg -3'
miRNA:   3'- -UCCA-CACU-ACG-------------UCUGCU------GCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 31480 0.68 0.785143
Target:  5'- uGG-GUGAUGCGGGgGGC--CCCCUGg -3'
miRNA:   3'- uCCaCACUACGUCUgCUGcuGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 31646 0.67 0.828456
Target:  5'- gGGGUG-GggGCGG-CG-CGACCCUCu -3'
miRNA:   3'- -UCCACaCuaCGUCuGCuGCUGGGGGc -5'
21396 5' -57.4 NC_004812.1 + 32827 0.72 0.540041
Target:  5'- cGGacgaGUGGggGCGGGgGGCGGCCCCCa -3'
miRNA:   3'- uCCa---CACUa-CGUCUgCUGCUGGGGGc -5'
21396 5' -57.4 NC_004812.1 + 32831 0.72 0.540041
Target:  5'- cGaGUG-GggGCGGGgGGCGGCCCCCa -3'
miRNA:   3'- uC-CACaCuaCGUCUgCUGCUGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.