miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21397 5' -57.5 NC_004812.1 + 156300 0.66 0.863346
Target:  5'- cGUgCUGGUugccCGCGCUcucGGGCGCggccgGACGg -3'
miRNA:   3'- -UAgGACCA----GUGCGA---CCUGCGa----CUGCg -5'
21397 5' -57.5 NC_004812.1 + 112755 0.66 0.863346
Target:  5'- -aCCUGGcCGaGCgaucguucugaUGGAcaCGCUGGCGCa -3'
miRNA:   3'- uaGGACCaGUgCG-----------ACCU--GCGACUGCG- -5'
21397 5' -57.5 NC_004812.1 + 125399 0.66 0.863346
Target:  5'- cGUgCUGGUugccCGCGCUcucGGGCGCggccgGACGg -3'
miRNA:   3'- -UAgGACCA----GUGCGA---CCUGCGa----CUGCg -5'
21397 5' -57.5 NC_004812.1 + 111403 0.66 0.862594
Target:  5'- cGUCCgcGGcCGCGCUGcuGCGCUcccgggccuggguGACGCa -3'
miRNA:   3'- -UAGGa-CCaGUGCGACc-UGCGA-------------CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 54187 0.66 0.855733
Target:  5'- uGUUCUGGUUaugACGCuUGaGACGCcgcccgcgGGCGCu -3'
miRNA:   3'- -UAGGACCAG---UGCG-AC-CUGCGa-------CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 79135 0.66 0.855733
Target:  5'- cGUUCUGGUCGgcagGCUGGcGCGCUugggGugGUg -3'
miRNA:   3'- -UAGGACCAGUg---CGACC-UGCGA----CugCG- -5'
21397 5' -57.5 NC_004812.1 + 94625 0.66 0.855733
Target:  5'- -cCCUGG--GCGCggagagacGGGCGCgGGCGCc -3'
miRNA:   3'- uaGGACCagUGCGa-------CCUGCGaCUGCG- -5'
21397 5' -57.5 NC_004812.1 + 135325 0.66 0.855733
Target:  5'- cAUCCUGcaCACGCU----GCUGACGCu -3'
miRNA:   3'- -UAGGACcaGUGCGAccugCGACUGCG- -5'
21397 5' -57.5 NC_004812.1 + 121480 0.66 0.855733
Target:  5'- -gCCUGGagUC-C-CUGGAC-CUGACGCu -3'
miRNA:   3'- uaGGACC--AGuGcGACCUGcGACUGCG- -5'
21397 5' -57.5 NC_004812.1 + 59142 0.66 0.855733
Target:  5'- --aCUGGUCGaugcCGCUGG-CGCcguccgacgGGCGCa -3'
miRNA:   3'- uagGACCAGU----GCGACCuGCGa--------CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 50473 0.66 0.855733
Target:  5'- -gCCUcGGcgggCGCGUgUGGACGCcgGGCGCc -3'
miRNA:   3'- uaGGA-CCa---GUGCG-ACCUGCGa-CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 71254 0.66 0.855733
Target:  5'- cGUCCaGGUCgaugaacgcgcACGCcgGGACGgUGAuCGCc -3'
miRNA:   3'- -UAGGaCCAG-----------UGCGa-CCUGCgACU-GCG- -5'
21397 5' -57.5 NC_004812.1 + 110635 0.66 0.847921
Target:  5'- -aCCUc--CGCGCgGGGCGgaGACGCg -3'
miRNA:   3'- uaGGAccaGUGCGaCCUGCgaCUGCG- -5'
21397 5' -57.5 NC_004812.1 + 143109 0.66 0.847921
Target:  5'- -gCCgUGGgcccCGCGcCUGG-CGCUGACGg -3'
miRNA:   3'- uaGG-ACCa---GUGC-GACCuGCGACUGCg -5'
21397 5' -57.5 NC_004812.1 + 19790 0.66 0.847921
Target:  5'- cGUCCUcGUCccCGCUGGGCggcuccucGCUGcuGCGCa -3'
miRNA:   3'- -UAGGAcCAGu-GCGACCUG--------CGAC--UGCG- -5'
21397 5' -57.5 NC_004812.1 + 65127 0.66 0.847921
Target:  5'- -cCCUgccGGUCGguCUGGACGCcuucgGGCGCg -3'
miRNA:   3'- uaGGA---CCAGUgcGACCUGCGa----CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 137845 0.66 0.839916
Target:  5'- gGUCCUGGcgCugGCgacGGACGagguGCGCc -3'
miRNA:   3'- -UAGGACCa-GugCGa--CCUGCgac-UGCG- -5'
21397 5' -57.5 NC_004812.1 + 82801 0.66 0.831726
Target:  5'- --gCUGGggugggaGCGCgGGGCGCcGGCGCc -3'
miRNA:   3'- uagGACCag-----UGCGaCCUGCGaCUGCG- -5'
21397 5' -57.5 NC_004812.1 + 94277 0.66 0.831726
Target:  5'- cGUCCUcGUCgaGCGCgcgGGGCGC-GACGa -3'
miRNA:   3'- -UAGGAcCAG--UGCGa--CCUGCGaCUGCg -5'
21397 5' -57.5 NC_004812.1 + 88936 0.66 0.831726
Target:  5'- -cCCUGG-C-CGCcGGugGCgaggagGGCGCg -3'
miRNA:   3'- uaGGACCaGuGCGaCCugCGa-----CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.