miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21398 5' -64.1 NC_004812.1 + 45603 0.65 0.591229
Target:  5'- --cUCAGGgccaggaagguucUGGCGGUCgCGCggcuguucCGCCCGu -3'
miRNA:   3'- cacAGUCC-------------ACCGCCAGgGCG--------GCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 95782 0.65 0.58931
Target:  5'- cGUGgagcCGGG-GGCGGUgCUGgugaagugaccgccCCGCCCGa -3'
miRNA:   3'- -CACa---GUCCaCCGCCAgGGC--------------GGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 123909 0.66 0.563531
Target:  5'- -gGggAGGUGcuggcgcccGCGGUCCCggGCCGgCCCGg -3'
miRNA:   3'- caCagUCCAC---------CGCCAGGG--CGGC-GGGC- -5'
21398 5' -64.1 NC_004812.1 + 128104 0.66 0.53619
Target:  5'- -gGUCuuAGGUGGCcgcGGagcccccuuuccccgCCCGCCGCCgGg -3'
miRNA:   3'- caCAG--UCCACCG---CCa--------------GGGCGGCGGgC- -5'
21398 5' -64.1 NC_004812.1 + 38376 0.66 0.554056
Target:  5'- -aGgCGGGcGGCGGggCCCGCCgggaGCUCGg -3'
miRNA:   3'- caCaGUCCaCCGCCa-GGGCGG----CGGGC- -5'
21398 5' -64.1 NC_004812.1 + 103679 0.66 0.563531
Target:  5'- -cGUCAGGgccucgcaguaGGCGGgcagguccUCCCGgCGCgCCGg -3'
miRNA:   3'- caCAGUCCa----------CCGCC--------AGGGCgGCG-GGC- -5'
21398 5' -64.1 NC_004812.1 + 74228 0.66 0.554056
Target:  5'- ---cCAGG-GGCcccgGGUCuCCGCgCGCCCGc -3'
miRNA:   3'- cacaGUCCaCCG----CCAG-GGCG-GCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 57638 0.66 0.582602
Target:  5'- uUGUCGGGggGGCcgucgccaaacaGGUCguCCGCgGCCCc -3'
miRNA:   3'- cACAGUCCa-CCG------------CCAG--GGCGgCGGGc -5'
21398 5' -64.1 NC_004812.1 + 150683 0.66 0.53432
Target:  5'- uGUGccCGGG-GGCcugcccgGGgucugCCUGCCGCCCGg -3'
miRNA:   3'- -CACa-GUCCaCCG-------CCa----GGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 103529 0.66 0.554056
Target:  5'- cUG-CAGGUcccuggGGCGGcCCuugagCGCCGCCUGg -3'
miRNA:   3'- cACaGUCCA------CCGCCaGG-----GCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 67800 0.66 0.561632
Target:  5'- --uUCGGGgggGGCGGgcccggcagcccCCCGuCCGUCCGa -3'
miRNA:   3'- cacAGUCCa--CCGCCa-----------GGGC-GGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 145599 0.66 0.544629
Target:  5'- cUGUcCGGGgcgaaGGCGGaCCCGUgGUCCGc -3'
miRNA:   3'- cACA-GUCCa----CCGCCaGGGCGgCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 66305 0.66 0.535255
Target:  5'- --cUCGcGGcUGGCGGcgcccaggcgCCCGUCGCCCGc -3'
miRNA:   3'- cacAGU-CC-ACCGCCa---------GGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 52317 0.66 0.535255
Target:  5'- -cGUCGGGgugGGCGG-CacuuaaauaCGCgGCCCGc -3'
miRNA:   3'- caCAGUCCa--CCGCCaGg--------GCGgCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 119781 0.66 0.544629
Target:  5'- uGUGccCGGG-GGCcugccccgGGgucugCCUGCCGCCCGg -3'
miRNA:   3'- -CACa-GUCCaCCG--------CCa----GGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 138378 0.66 0.554056
Target:  5'- -cGggCGGG-GGCGcGUa-CGCCGCCCGg -3'
miRNA:   3'- caCa-GUCCaCCGC-CAggGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 41106 0.66 0.563531
Target:  5'- -cGUUccucgAGGUgaGGcCGGg-CCGCCGCCCGg -3'
miRNA:   3'- caCAG-----UCCA--CC-GCCagGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 113165 0.66 0.544629
Target:  5'- ----aGGGUcGGCGGagggCCgCGUCGCCCGa -3'
miRNA:   3'- cacagUCCA-CCGCCa---GG-GCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 62248 0.66 0.554056
Target:  5'- -cG-CAGGgcGGCGcUCCaaCGCCGCCCGc -3'
miRNA:   3'- caCaGUCCa-CCGCcAGG--GCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 69515 0.66 0.582602
Target:  5'- -gGUCGagacGGaGGCcgccgGGUCCgGCCGCCCc -3'
miRNA:   3'- caCAGU----CCaCCG-----CCAGGgCGGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.