miRNA display CGI


Results 1 - 20 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21398 5' -64.1 NC_004812.1 + 523 0.69 0.411775
Target:  5'- -----cGG-GGCGGgCCCGCgCGCCCGg -3'
miRNA:   3'- cacaguCCaCCGCCaGGGCG-GCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 669 0.69 0.395595
Target:  5'- ---cCAGGUucgcaccccGGCGcUCCCGCgGCCCGg -3'
miRNA:   3'- cacaGUCCA---------CCGCcAGGGCGgCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 1988 0.73 0.219554
Target:  5'- -gGagGGGUGGCgGGUCCCGCCGgCgGu -3'
miRNA:   3'- caCagUCCACCG-CCAGGGCGGCgGgC- -5'
21398 5' -64.1 NC_004812.1 + 2987 0.7 0.3423
Target:  5'- -cGUCGGGcGGcCGGUCCaguuGCCgGCCCa -3'
miRNA:   3'- caCAGUCCaCC-GCCAGGg---CGG-CGGGc -5'
21398 5' -64.1 NC_004812.1 + 3250 0.71 0.300898
Target:  5'- -cGcCAGG-GGCGcccgcgccCCCGCCGCCCGa -3'
miRNA:   3'- caCaGUCCaCCGCca------GGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 3460 0.71 0.307521
Target:  5'- -gGUCGGGcccggcgGGCGGUCgCGCCGUCa- -3'
miRNA:   3'- caCAGUCCa------CCGCCAGgGCGGCGGgc -5'
21398 5' -64.1 NC_004812.1 + 4397 0.7 0.335123
Target:  5'- -cGUCGcccgGGUGGUCCCGCCgcacucgccuGCCCGa -3'
miRNA:   3'- caCAGUcca-CCGCCAGGGCGG----------CGGGC- -5'
21398 5' -64.1 NC_004812.1 + 6348 0.7 0.349588
Target:  5'- -aG-CAGGgGGCGGcaggCgCGCCGCCCGc -3'
miRNA:   3'- caCaGUCCaCCGCCa---GgGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 7560 0.76 0.150313
Target:  5'- -gGgcgCGGGgGGCGGUCCCGCC-CCCa -3'
miRNA:   3'- caCa--GUCCaCCGCCAGGGCGGcGGGc -5'
21398 5' -64.1 NC_004812.1 + 7998 0.69 0.403634
Target:  5'- -gGUCAGGggGGCGcUCCCGCgacCCCGg -3'
miRNA:   3'- caCAGUCCa-CCGCcAGGGCGgc-GGGC- -5'
21398 5' -64.1 NC_004812.1 + 8614 0.66 0.573048
Target:  5'- -cGUCGcccu-CGGcCCCGCCGCCCGg -3'
miRNA:   3'- caCAGUccaccGCCaGGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 9995 0.7 0.364493
Target:  5'- cUGUCGcGUGGaggaGGUgCUGCCGCCCc -3'
miRNA:   3'- cACAGUcCACCg---CCAgGGCGGCGGGc -5'
21398 5' -64.1 NC_004812.1 + 11974 0.66 0.582602
Target:  5'- cGUGUCccgcGGG-GGCGGggUUCCGCCGgCgGg -3'
miRNA:   3'- -CACAG----UCCaCCGCC--AGGGCGGCgGgC- -5'
21398 5' -64.1 NC_004812.1 + 13019 0.67 0.505664
Target:  5'- -cGUCGGGgcgacuccGGCGGgguccguuucagCUCGUCGCCCa -3'
miRNA:   3'- caCAGUCCa-------CCGCCa-----------GGGCGGCGGGc -5'
21398 5' -64.1 NC_004812.1 + 13330 0.74 0.182041
Target:  5'- -gGUCGGGggugcGGCGGUCCCuuCCGCgCCGg -3'
miRNA:   3'- caCAGUCCa----CCGCCAGGGc-GGCG-GGC- -5'
21398 5' -64.1 NC_004812.1 + 13363 0.74 0.182041
Target:  5'- -gGUCGGGggugcGGCGGUCCCuuCCGCgCCGg -3'
miRNA:   3'- caCAGUCCa----CCGCCAGGGc-GGCG-GGC- -5'
21398 5' -64.1 NC_004812.1 + 14295 0.67 0.489329
Target:  5'- --aUCAGuagGGCGcGcCCCGCCGCgCCGg -3'
miRNA:   3'- cacAGUCca-CCGC-CaGGGCGGCG-GGC- -5'
21398 5' -64.1 NC_004812.1 + 14551 0.71 0.287983
Target:  5'- -cG-CGGG-GGCGGgCUCGUCGCCCGg -3'
miRNA:   3'- caCaGUCCaCCGCCaGGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 16721 0.7 0.356986
Target:  5'- -cG-CGGGgc-CGGUCCCGCuCGCCCGu -3'
miRNA:   3'- caCaGUCCaccGCCAGGGCG-GCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 17040 0.68 0.436797
Target:  5'- -gGUCGGcGgggGGCgccucGGUCCCgGCCGCCgCGg -3'
miRNA:   3'- caCAGUC-Ca--CCG-----CCAGGG-CGGCGG-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.